Alignments for a candidate for argI in Xenophilus azovorans DSM 13620

Align Ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_038218348.1 Q392_RS30560 ornithine carbamoyltransferase

Query= reanno::HerbieS:HSERO_RS07185
         (304 letters)



>NCBI__GCF_000745855.1:WP_038218348.1
          Length = 308

 Score =  443 bits (1139), Expect = e-129
 Identities = 213/303 (70%), Positives = 248/303 (81%), Gaps = 1/303 (0%)

Query: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF 60
           +AI+HYLQFSDFT DEY Y+ ER+ +IK KFK YE H  L DRTL M+FEK STRTR+SF
Sbjct: 4   LAIRHYLQFSDFTADEYAYLFERAAIIKGKFKAYEKHQPLTDRTLAMIFEKASTRTRVSF 63

Query: 61  EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV 120
           EAGM+Q+GG  ++L T DSQLGR EP+ED+A+V+SRM D++MIRT+ QE IERFA HSRV
Sbjct: 64  EAGMYQLGGGVVHLTTGDSQLGRAEPIEDSAKVISRMVDLVMIRTFEQEKIERFAAHSRV 123

Query: 121 PVINGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV 180
           PVINGLTNE HPCQ+LAD+FT+IEH GSIQGK VAWVGD NNM  +WLQAAE+ GF V+V
Sbjct: 124 PVINGLTNEFHPCQILADLFTFIEHRGSIQGKTVAWVGDGNNMANTWLQAAEILGFTVHV 183

Query: 181 STPKGYDIDPAQVS-PGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDG 239
           STP GY++D       G  +Y  F DP DAC+ ADLVTTDVWTSMG+EAEN AR KAF  
Sbjct: 184 STPTGYEVDQDVAGIRGTDSYKVFKDPMDACRGADLVTTDVWTSMGYEAENEARRKAFAD 243

Query: 240 WIVDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLV 299
           W VD+A MA AK DALFMHCLPAHRGEEV AEVIDGPQSVVW+EAENR+H QKAL+E+L+
Sbjct: 244 WCVDEAMMAVAKPDALFMHCLPAHRGEEVTAEVIDGPQSVVWDEAENRMHAQKALMEFLL 303

Query: 300 HGR 302
            GR
Sbjct: 304 LGR 306


Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 308
Length adjustment: 27
Effective length of query: 277
Effective length of database: 281
Effective search space:    77837
Effective search space used:    77837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_038218348.1 Q392_RS30560 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.13764.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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