Alignments for a candidate for asp-kinase in Xenophilus azovorans DSM 13620

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_038218539.1 Q392_RS30930 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000745855.1:WP_038218539.1
          Length = 422

 Score =  521 bits (1342), Expect = e-152
 Identities = 275/421 (65%), Positives = 333/421 (79%), Gaps = 14/421 (3%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQIT-D 59
           MALIV K+GGTS+GS ERI  VA++V K   AG  +V+V SAMSGETNRL+ LAK++   
Sbjct: 1   MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVIVPSAMSGETNRLLGLAKELAPS 60

Query: 60  QP---VPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQI 116
           QP     RELD++ +TGEQ + ALL +AL   G+ AVSYTG QV + TDSS+ KARI  I
Sbjct: 61  QPNDDYRRELDMLAATGEQASSALLAIALQSEGMEAVSYTGWQVGVRTDSSYTKARIESI 120

Query: 117 DDQKIRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVD 176
           DD ++RADL EGRVVV+ GFQGVD+ G+ITTLGRGGSDT+ VA+AAALKADEC IYTDVD
Sbjct: 121 DDARVRADLTEGRVVVITGFQGVDDEGNITTLGRGGSDTSAVAIAAALKADECLIYTDVD 180

Query: 177 GVYTTDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSF---- 232
           GVYTTDPRV P ARRL K++FEEMLEMASLGSKVLQIRSVEFAGKY VPLRVL SF    
Sbjct: 181 GVYTTDPRVEPDARRLSKVSFEEMLEMASLGSKVLQIRSVEFAGKYKVPLRVLSSFTPWD 240

Query: 233 -----KEGPGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAS 287
                +   GTLIT +E+E+MEQ ++SGIAF+RDEAK+++ GVPD PG+A+ ILG ++ +
Sbjct: 241 IDINEEAKSGTLITFEEDETMEQAVVSGIAFSRDEAKISVLGVPDKPGIAYHILGAVADA 300

Query: 288 NIEVDMIVQNVAHDNTTDFTFTVHRNEYEKAQSVLE-NTAREIGAREVIGDTKIAKVSIV 346
           NIEVD+I+QN++ D  TDF+FTV RNEY +   +L+      +GA E++GDTKI KVSIV
Sbjct: 301 NIEVDVIIQNLSKDGKTDFSFTVTRNEYARTVELLKTKVLPSLGASEIVGDTKICKVSIV 360

Query: 347 GVGMRSHAGVASCMFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLDAP 406
           G+GMRSH GVAS MF  L++E INIQMISTSEIK SVV++EKY+ELAVRALH AFDLD P
Sbjct: 361 GIGMRSHVGVASKMFRVLSEEGINIQMISTSEIKTSVVIDEKYMELAVRALHKAFDLDQP 420

Query: 407 A 407
           A
Sbjct: 421 A 421


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 535
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 422
Length adjustment: 31
Effective length of query: 380
Effective length of database: 391
Effective search space:   148580
Effective search space used:   148580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_038218539.1 Q392_RS30930 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.28741.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28741.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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