Align Chorismate mutase AroH; CM; EC 5.4.99.5 (characterized)
to candidate WP_039653205.1 PN53_RS10915 chorismate mutase
Query= SwissProt::P19080
(127 letters)
>NCBI__GCF_000816635.1:WP_039653205.1
Length = 122
Score = 60.8 bits (146), Expect = 6e-15
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 6 IRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVREL 65
+RGATT+E ++ +I + +L +I+++N+ K + ++ + +S T D+ +P K +RE
Sbjct: 4 LRGATTIENNSITDIKDASIELFSQILKKNNIKLQKIISIEISCTKDITKAYPGKFIREY 63
Query: 66 SGWQYVPVTCMQEMDVTGGLK----KCIRVMMTVQTDVPQDQIRHVYLEKVVVLRPDL 119
V + EM+V LK CIR ++ V D+ + + VYL LR DL
Sbjct: 64 FKLDKVAIMHFNEMEVEKNLKGFIPLCIRFLLLVDEDIYKKEF--VYLNNAKKLRIDL 119
Lambda K H
0.318 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 122
Length adjustment: 14
Effective length of query: 113
Effective length of database: 108
Effective search space: 12204
Effective search space used: 12204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)
Align candidate WP_039653205.1 PN53_RS10915 (chorismate mutase)
to HMM TIGR01796 (aroH: chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.31184.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31184.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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