Alignments for a candidate for hisH in Nocardiopsis lucentensis DSM 44048

Align Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 (characterized)
to candidate WP_040690415.1 D471_RS0119665 imidazole glycerol phosphate synthase subunit HisH

Query= SwissProt::P59957
         (206 letters)



>NCBI__GCF_000341125.1:WP_040690415.1
          Length = 218

 Score =  258 bits (659), Expect = 6e-74
 Identities = 129/210 (61%), Positives = 152/210 (72%), Gaps = 12/210 (5%)

Query: 6   VVVLDYGSGNLRSAQRALQRVGAEVEVTADTDAAMTADGLVVPGVGAFAACMAGLRKISG 65
           VVV DYGSGNLRSAQRA++R GA+V VT+D   A+ ADGLVVPGVGAF+ACM+ LR   G
Sbjct: 5   VVVFDYGSGNLRSAQRAMERTGADVTVTSDPHTALDADGLVVPGVGAFSACMSSLRAAGG 64

Query: 66  ERIIAERVAAGRPVLGVCVGMQILFACGVEFG------VQTPGCGHWPGAVIRLEAPVIP 119
           +RII +RVA GRPVLG+CVGMQ+LF  GVE        V T GCG WPG V RL APV+P
Sbjct: 65  DRIIGKRVAGGRPVLGICVGMQVLFERGVEQADVHAEDVATEGCGEWPGTVERLRAPVVP 124

Query: 120 HMGWNVVDSAAGSALFKGLDVDARFYFVHSYAAQRWEGSPDAL------LTWATYRAPFL 173
           HMGWN V     + LF G+  + RFYFVHSYA + WE +P         +TW+ +  PF+
Sbjct: 125 HMGWNTVRPPEDTRLFAGIGPEDRFYFVHSYAVRTWEFTPTNARIPAPGVTWSEHGEPFV 184

Query: 174 AAVEDGALAATQFHPEKSGDAGAAVLSNWV 203
           AAVE+G L ATQFHPEKSGDAGA VL+NWV
Sbjct: 185 AAVENGPLCATQFHPEKSGDAGARVLANWV 214


Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 190
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 218
Length adjustment: 21
Effective length of query: 185
Effective length of database: 197
Effective search space:    36445
Effective search space used:    36445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_040690415.1 D471_RS0119665 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.21757.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21757.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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