Alignments for a candidate for tpi in Sulfuritalea hydrogenivorans DSM 22779

Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate WP_041098118.1 SUTH_RS06825 triose-phosphate isomerase

Query= BRENDA::P0A858
         (255 letters)



>NCBI__GCF_000828635.1:WP_041098118.1
          Length = 249

 Score =  243 bits (621), Expect = 2e-69
 Identities = 132/249 (53%), Positives = 167/249 (67%), Gaps = 2/249 (0%)

Query: 1   MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60
           MR  LV GNWK++GS      L+  +R  + G A  AV +  P  Y+  A+   +GS + 
Sbjct: 1   MRTKLVAGNWKMHGSLATNLGLLHAVRDGVKGPAEVAVCVPYP--YLAQARAVLDGSGVA 58

Query: 61  LGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120
            GAQ+V  +  GA+TGE SAAML D G +Y ++GHSERR++  ++D ++A KFA   + G
Sbjct: 59  WGAQDVSEHAQGAWTGEVSAAMLADFGCRYALVGHSERRSFFGDTDAVVAAKFAAALKAG 118

Query: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180
           LTPVLC+GE+ AE EAG T EV  RQIDAVL   G AAF  AV+AYEPVWAIGTG++A+P
Sbjct: 119 LTPVLCVGESLAEREAGVTGEVVTRQIDAVLANSGVAAFANAVVAYEPVWAIGTGRTASP 178

Query: 181 AQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240
           AQAQ VH  IR   A+  A++A  + I YGGSV A+NAAELF Q DIDG L+GGASL A 
Sbjct: 179 AQAQEVHALIRARFARDSADVAAGLRILYGGSVKANNAAELFGQIDIDGGLIGGASLVAA 238

Query: 241 AFAVIVKAA 249
            F  I  AA
Sbjct: 239 DFLAICSAA 247


Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 188
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 249
Length adjustment: 24
Effective length of query: 231
Effective length of database: 225
Effective search space:    51975
Effective search space used:    51975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)

Align candidate WP_041098118.1 SUTH_RS06825 (triose-phosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.12770.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12770.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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