Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate WP_041098277.1 SUTH_RS07420 acetoacetate--CoA ligase
Query= BRENDA::Q9Z3R3
(650 letters)
>NCBI__GCF_000828635.1:WP_041098277.1
Length = 659
Score = 766 bits (1979), Expect = 0.0
Identities = 387/653 (59%), Positives = 471/653 (72%), Gaps = 10/653 (1%)
Query: 6 PLWVPDREIVERSPMAEFIDWCGERFGRSFA--DYDAFHDWSVSERGAFWTAVWEHCKVI 63
P+W P + + + + F +R+ R A DY H WS+ FW +VWE +V
Sbjct: 7 PIWQPSAQCIAGTRLTAFTKAAAKRWNRRLASADYLTLHAWSIDHPEEFWASVWEFGEVR 66
Query: 64 GESGEKALVDGDRMLDARFFPEARLNFAENLLRKTGSGDALIFRGEDKVSYRLTWDELRA 123
GE G +V+ ++M A++FP+ARLNFAENLLR+ GDAL+F GED+V R + +L
Sbjct: 67 GEMGSTIVVNREKMPGAKWFPQARLNFAENLLRRRDDGDALVFWGEDRVRGRASHADLYR 126
Query: 124 LVSRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVLDRF 183
V++ ALRA G+ GDRVAA +PN+P + MLATAS+GAI+SS SPDFG QGV+DRF
Sbjct: 127 AVAQTAAALRAMGVVKGDRVAAYLPNLPAAVVAMLATASIGAIFSSASPDFGVQGVVDRF 186
Query: 184 GQIAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGA--PTVIVPYAGDSAALAPTVEGGV 241
GQI PK+ CDGY+YNGK D KV +A + + V+VPYAG ++ V+ GV
Sbjct: 187 GQIEPKVLFACDGYFYNGKTIDCLGKVADIAARMPSLERVVVVPYAGGGGDIS-AVKHGV 245
Query: 242 TLADFIAGFQAG-PLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFHC 300
LADF+A F + FERLPF HPLYI++SSGTTGVPKCIVH AGG LLQH+KEH+
Sbjct: 246 ALADFLAPFAGERDIRFERLPFDHPLYIMYSSGTTGVPKCIVHCAGGVLLQHIKEHQLQS 305
Query: 301 GLRDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVFG 360
+R +RLFYFTTCGWMMWNWL S LA GATL LYDGSPF GN+LFDYA AE G
Sbjct: 306 DVRANDRLFYFTTCGWMMWNWLVSALASGATLLLYDGSPFVGRGNILFDYADAEGMTHLG 365
Query: 361 TSAKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGGT 420
TSAK+IDA+ K P +TH L +R + STGSPL EGF +VY IK +VQLAS+SGGT
Sbjct: 366 TSAKFIDAIAKIELKPCQTHKLEHVRAVFSTGSPLVAEGFDYVYANIKQNVQLASVSGGT 425
Query: 421 DIVSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMFW 480
DI+SCFV+GNP PV+RGEIQ GLG+AV V++D G+PVRGEKGELVCTR+FP MP+ FW
Sbjct: 426 DIISCFVIGNPNGPVYRGEIQCAGLGMAVGVFDDAGRPVRGEKGELVCTRSFPVMPIGFW 485
Query: 481 NDPDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTAEIYNQV 540
D GAKY AAYF+RFDN+WCHGDFAE T HGG +I+GRSDATLNPGGVRIGTAEIY QV
Sbjct: 486 KDEGGAKYHAAYFERFDNIWCHGDFAEITAHGGFIIYGRSDATLNPGGVRIGTAEIYRQV 545
Query: 541 EQMDEVAEALCIGQDW----EDDVRVVLFVRLARGVELTEALTREIKNRIRSGASPRHVP 596
E++ EV E++ IGQDW DVRVVLFV+L + L +AL + IK I+ +PRHVP
Sbjct: 546 EKLPEVVESIVIGQDWPPGNSGDVRVVLFVKLREALVLDDALEKRIKQVIKDNTTPRHVP 605
Query: 597 AKIIAVADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALDLFAGLEELK 649
AKI+ VADIPRTKSGKIVELAVR+VVHG VKN EALANPEAL+ F EL+
Sbjct: 606 AKILQVADIPRTKSGKIVELAVRNVVHGAAVKNVEALANPEALEHFRDRAELQ 658
Lambda K H
0.322 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1398
Number of extensions: 59
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 659
Length adjustment: 38
Effective length of query: 612
Effective length of database: 621
Effective search space: 380052
Effective search space used: 380052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Align candidate WP_041098277.1 SUTH_RS07420 (acetoacetate--CoA ligase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.21479.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21479.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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