Alignments for a candidate for paaK in Sulfuritalea hydrogenivorans DSM 22779

Align Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 (characterized)
to candidate WP_041098410.1 SUTH_RS08100 phenylacetate--CoA ligase PaaK

Query= SwissProt::Q9L9C1
         (440 letters)



>NCBI__GCF_000828635.1:WP_041098410.1
          Length = 436

 Score =  610 bits (1574), Expect = e-179
 Identities = 291/430 (67%), Positives = 351/430 (81%)

Query: 10  DLEPIEKASQDELRALQLERLKWSVRHAYENVPHYRKAFDAKGVHPDDLKSLADLAKFPF 69
           +LEPIEKAS+DEL+ALQL+R++WS++H Y+NVPHYR+ +DA GVHP DLK L+DLAKFPF
Sbjct: 7   NLEPIEKASRDELQALQLKRMQWSLQHVYDNVPHYRQKYDAAGVHPGDLKQLSDLAKFPF 66

Query: 70  TAKGDLRDNYPFGMFAVPREKVARVHASSGTTGKPTVVGYTLKDIDTWATVVARSIRASG 129
           T K DLRD YP+GMFA P + V RVHASSGTTGKPTVVGYT  DI  WA ++ARS+R +G
Sbjct: 67  TTKLDLRDTYPYGMFATPMKDVVRVHASSGTTGKPTVVGYTKNDIAMWAQLMARSMRGAG 126

Query: 130 GRAGDMVHIAYGYGLFTGGLGAHYGAEKLGCTVVPMSGGQTEKQIQLIQDFKPDIIMVTP 189
             A D++  +YGYGLFTGGLGAHYG E LG TV+PMSGGQTEKQ+QLIQDFKP +IM TP
Sbjct: 127 CSADDIILNSYGYGLFTGGLGAHYGGEFLGATVIPMSGGQTEKQVQLIQDFKPTVIMCTP 186

Query: 190 SYMLTVLDEMERMGIDPHQTSLKVGIFGAEPWTQAMRAAMEARAGIDAVDIYGLSEVMGP 249
           SY+LT+ DEM + G+ P+ ++L+VG+FGAEPWT  MR  +E R GIDAVDIYGLSEVMGP
Sbjct: 187 SYVLTIADEMIKQGMKPNGSTLRVGLFGAEPWTNEMRREIEERLGIDAVDIYGLSEVMGP 246

Query: 250 GVANECIEAKDGPVIWEDHFYPEIIDPHTGEVLPDGSEGELVFTTLTKEAMPVIRYRTRD 309
           GVA EC+E KDGP IWEDHFYPEII P TGEVLPDG  GELVFT+L+KEA+P+IRYRTRD
Sbjct: 247 GVACECVETKDGPHIWEDHFYPEIIHPETGEVLPDGEIGELVFTSLSKEALPIIRYRTRD 306

Query: 310 LTRLLPPTARSMRRMAKITGRSDDMLIIRGVNLFPTQVEELICKNPKLAPQYLLEVDKDG 369
           LTRLLP TAR+MRRM KITGRSDDMLIIRGVN+FPTQ+EE++ KNP L  QY L+V +DG
Sbjct: 307 LTRLLPGTARTMRRMEKITGRSDDMLIIRGVNVFPTQIEEVLLKNPNLCAQYQLQVSRDG 366

Query: 370 HMDTLTVKVEINPEANVGRHPEQKEALAKELQHDIKTFIGVSAKVHVCEPFAIERVTIGK 429
           H+D L V VE+  + +     +++  +  E++H IK  +GVSA VHV E   +ER  +GK
Sbjct: 367 HLDKLDVYVEVRADLSSSIGEQKRREIGAEVKHHIKALVGVSADVHVVETDKVERTLVGK 426

Query: 430 AKRVVDRRPK 439
           AKRV+DRRPK
Sbjct: 427 AKRVIDRRPK 436


Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 699
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 436
Length adjustment: 32
Effective length of query: 408
Effective length of database: 404
Effective search space:   164832
Effective search space used:   164832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_041098410.1 SUTH_RS08100 (phenylacetate--CoA ligase PaaK)
to HMM TIGR02155 (paaF: phenylacetate-CoA ligase (EC 6.2.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.32638.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32638.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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