Alignments for a candidate for lpd in Sulfuritalea hydrogenivorans DSM 22779

Align dihydrolipoyl dehydrogenase; EC 1.8.1.4 (characterized)
to candidate WP_041098696.1 SUTH_RS08985 dihydrolipoyl dehydrogenase

Query= CharProtDB::CH_015561
         (478 letters)



>NCBI__GCF_000828635.1:WP_041098696.1
          Length = 475

 Score =  525 bits (1352), Expect = e-153
 Identities = 280/472 (59%), Positives = 345/472 (73%), Gaps = 4/472 (0%)

Query: 3   QKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEK--YTDAEGKLALGGTCLNVGCIPSKAL 60
           ++FDVVVIG GPGGYVAAI+AAQLGL TACIE   Y D +G++ LGGTCLNVGCIPSKAL
Sbjct: 4   KQFDVVVIGGGPGGYVAAIRAAQLGLSTACIESESYADPKGEVRLGGTCLNVGCIPSKAL 63

Query: 61  LDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQG 120
           L SS  Y++A  SF +HGIST  VKMDVA M+ RK  IV  LT G+  LFK N VT + G
Sbjct: 64  LQSSELYEQANHSFVMHGISTSGVKMDVATMIKRKDNIVGQLTSGIKGLFKKNKVTLLPG 123

Query: 121 HGKLLAGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALEFQAV 180
           HGK ++ +  E    D   E +EA +VI+A+GSR   +P  PVD  VI D+ GAL+F +V
Sbjct: 124 HGKFVSQEN-ERWIIDVNGERVEATHVIVATGSRARHLPGIPVDNKVICDNVGALQFDSV 182

Query: 181 PKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLT-KQGLDI 239
           PKRLGVIGAGVIGLELGSVW RLG+EVT+LEAL  FL AAD AV+KEA KT T KQGLDI
Sbjct: 183 PKRLGVIGAGVIGLELGSVWKRLGSEVTILEALPDFLAAADQAVAKEAWKTFTQKQGLDI 242

Query: 240 KLGARVTGSKVNGNEVEVTYTNAEGEQKITFDKLIVAVGRRPVTTDLLAADSGVTIDERG 299
           +LG ++T  +     V V Y   +  + +  D+LIV+VGR P T  L A + G++I+ RG
Sbjct: 243 QLGVKITKVETGKKGVTVDYELGDETRTLQCDRLIVSVGRVPHTEGLGAENVGLSINPRG 302

Query: 300 YIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYDLIPSVIYT 359
           YI VD  C T++P V+A+GDVV G MLAHK+ EEG+MV E I G K  +N D +P VIYT
Sbjct: 303 YIAVDKNCRTNLPNVWAVGDVVPGPMLAHKSMEEGVMVAECIAGQKGHVNLDTVPWVIYT 362

Query: 360 HPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLGVHV 419
           HPEIAWVGKTEQ LK EGVE   G  PFAA+GRA+   DT GFVK++A AKTDR+LGVHV
Sbjct: 363 HPEIAWVGKTEQQLKNEGVEYRSGQIPFAANGRALGQGDTTGFVKMLACAKTDRILGVHV 422

Query: 420 IGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIH 471
           IG +A+EL+ +  +AMEF  ++EDL  +  +HPTLSEA+HEA+LAV+  A+H
Sbjct: 423 IGNNASELIAEAVVAMEFNAASEDLARICHAHPTLSEAMHEASLAVDKRALH 474


Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 674
Number of extensions: 34
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 475
Length adjustment: 33
Effective length of query: 445
Effective length of database: 442
Effective search space:   196690
Effective search space used:   196690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_041098696.1 SUTH_RS08985 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.2244.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2244.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.