Alignments for a candidate for prpE in Sulfuritalea hydrogenivorans DSM 22779

Align propionate-CoA ligase (EC 6.2.1.17) (characterized)
to candidate WP_041099580.1 SUTH_RS12165 propionate--CoA ligase

Query= BRENDA::P77495
         (628 letters)



>NCBI__GCF_000828635.1:WP_041099580.1
          Length = 630

 Score =  791 bits (2043), Expect = 0.0
 Identities = 384/626 (61%), Positives = 475/626 (75%), Gaps = 3/626 (0%)

Query: 3   FSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDRWL 62
           ++EFY+RSI + + FWAEQ+  IDWQTP  +  D S PPFA WF  G+TNLCHNA+DR  
Sbjct: 4   YAEFYKRSIEQRDDFWAEQSALIDWQTPPQKICDFSKPPFANWFVGGKTNLCHNAVDRHA 63

Query: 63  EKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAH 122
            K+P   AL+ +S+ET EE+++TF +L  EV   A++++SLGV RGDRVL+YMPMIAEA 
Sbjct: 64  AKRPNDRALVYISTETNEEKSYTFAELKSEVMRAAAIMKSLGVGRGDRVLIYMPMIAEAT 123

Query: 123 ITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDDAI 182
             +LACARIGAIHSVVFGGFAS S+A RIDDAKP LIVS+DAG R G+ +PYK LLD+A 
Sbjct: 124 FAILACARIGAIHSVVFGGFASGSLATRIDDAKPKLIVSSDAGMRAGRAVPYKHLLDEAC 183

Query: 183 SQAQHQPRHVLLVDRGLAK-MARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYTS 241
             AQ  P  VL++DRGL K   +V+GRDVD+A LR +H+ A VP  W+ES E S ILYTS
Sbjct: 184 KLAQFPPEKVLMIDRGLDKGWPKVAGRDVDYAELRAKHMNADVPCEWMESTEPSYILYTS 243

Query: 242 GTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLAGM 301
           GTTGKPKGVQRD GGYAVALA SM  IF G  G   F  SDIGWVVGHSYI+Y PL+AGM
Sbjct: 244 GTTGKPKGVQRDTGGYAVALAASMKHIFQGGEGETMFSTSDIGWVVGHSYIIYGPLIAGM 303

Query: 302 ATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLYL 361
           ATI+YEG P  PD G+WW +VEKY+V+ MFSAPTA+RVLKK   + + K+DLSSL+ L+L
Sbjct: 304 ATIMYEGTPIRPDPGIWWQLVEKYKVNVMFSAPTAVRVLKKSDNSWLHKYDLSSLKHLFL 363

Query: 362 AGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYNV 421
           AGEPLD+PT  W+   L +PVIDNYWQTE+GWPI++  RG++D   + G+P  P+YGY++
Sbjct: 364 AGEPLDQPTHEWIMGELKLPVIDNYWQTETGWPILSTVRGVEDTKIKFGTPSFPVYGYDL 423

Query: 422 QLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRP-VYATFDWG 480
           ++  E  G  C  NEKG++ +  PLPPGC+ TIWGDD RFV TY+SLF  P VY++FDWG
Sbjct: 424 RIFRE-DGTVCDANEKGIVGIVPPLPPGCLSTIWGDDDRFVSTYFSLFKEPQVYSSFDWG 482

Query: 481 IRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAF 540
           I+D +GYHFILGRTDDVINVAGHRLGTREIEE++  H  VAEVAVVGV D LKGQ  VAF
Sbjct: 483 IKDDEGYHFILGRTDDVINVAGHRLGTREIEEAVQGHAAVAEVAVVGVSDQLKGQEPVAF 542

Query: 541 VIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQA 600
            + K+   +   ++  + E  I  +VD  +G   RP  V FV+ LPKTRSGKMLRR+IQA
Sbjct: 543 AVVKDPARIATPELRAALEAEIKKVVDGNLGAIARPKRVHFVTGLPKTRSGKMLRRSIQA 602

Query: 601 ICEGRDPGDLTTIDDPASLDQIRQAM 626
           + EGRD GDLTTIDDP++L+QI+ A+
Sbjct: 603 LAEGRDAGDLTTIDDPSTLEQIKAAL 628


Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1176
Number of extensions: 37
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 630
Length adjustment: 38
Effective length of query: 590
Effective length of database: 592
Effective search space:   349280
Effective search space used:   349280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)

Align candidate WP_041099580.1 SUTH_RS12165 (propionate--CoA ligase)
to HMM TIGR02316 (prpE: propionate--CoA ligase (EC 6.2.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.12829.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12829.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.