Align malonate-semialdehyde dehydrogenase (EC 1.2.1.15); malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized)
to candidate WP_041099671.1 SUTH_RS12545 CoA-acylating methylmalonate-semialdehyde dehydrogenase
Query= BRENDA::A0A081YAY7
(498 letters)
>NCBI__GCF_000828635.1:WP_041099671.1
Length = 505
Score = 582 bits (1500), Expect = e-170
Identities = 289/496 (58%), Positives = 360/496 (72%), Gaps = 3/496 (0%)
Query: 3 LIKHLIGGELIADTG-RTADVFNPSTGEAVRKVPLADRETMQQAIDAAKAAFPAWRNTPP 61
L+ H I G A G R +VFNP+ G R+V LA R + +A+ AA+AAF W + P
Sbjct: 11 LVGHWINGHADAGAGTRVGEVFNPAEGRVARQVALATRADVDRAVAAARAAFADWGSAAP 70
Query: 62 AKRAQVLFRFKQLLEANEERIVKLISEEHGKTIEDAAGELKRGIENVEYATAAPEILKGE 121
+RA+V+F+F+ L++ I KL+S EHGKT+ DA GE++RG+E +E+A P++LKG+
Sbjct: 71 QRRARVMFKFRDLVDQYSTDIAKLLSAEHGKTLPDALGEVQRGLEVIEFACGIPQLLKGQ 130
Query: 122 YSRNVGPNIDAWSDFQPIGVVAGITPFNFPAMVPLWMYPLAIACGNTFILKPSERDPSST 181
+S +G ID W+ P+GV AGITPFNFP MVP+WM P+A+ACGNTFILKPSERDPS +
Sbjct: 131 HSHGIGGGIDHWNQRMPLGVTAGITPFNFPFMVPMWMAPMALACGNTFILKPSERDPSPS 190
Query: 182 LLIAELFHEAGLPKGVLNVVHGDKGAVDALIEAPEVKALSFVGSTPIAEYIYSEGTKRGK 241
L AEL EAGLP G NV+ GDK AVDAL+E P V A+SFVGSTPIA+YI + G GK
Sbjct: 191 LFAAELLREAGLPAGAFNVIQGDKEAVDALLEHPFVSAVSFVGSTPIAKYIQAHGIAHGK 250
Query: 242 RVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGDQIADALVQKL 301
RVQALGGAKNH V+MPDADLD A AL+GAAYGS GERCMAISVAV VG AD LV ++
Sbjct: 251 RVQALGGAKNHMVVMPDADLDGAADALIGAAYGSAGERCMAISVAVAVG-SCADDLVARV 309
Query: 302 VPQIKGLKIGAGTSCGLDMGPLVTGAARDKVTGYIDTGVAQGAELVVDGRGYKVAGHENG 361
+ + K LK+GAG + ++MGPLVT RDKV GYI GV +GA+LV+DGR G
Sbjct: 310 LARAKKLKVGAGDAANVEMGPLVTAVHRDKVAGYIAAGVQEGAKLVLDGREGLTGELAQG 369
Query: 362 FFLGGTLFDRVTPEMTIYKEEIFGPVLCIVRVNSLEEAMQLINDHEYGNGTCIFTRDGEA 421
FF+ TLFD VTP M+IY+EEIFGPVLC+VRV + A++LIN H + NG FTRDG
Sbjct: 370 FFINPTLFDNVTPNMSIYQEEIFGPVLCVVRVPTFAAAVELINRHTFANGVACFTRDGGT 429
Query: 422 ARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTKRKAITQRW 481
A+ F +IEVGMVG+NVP+PVP+A+HSFGGWK SLFGD H YG +GVRFYT+ KAI QRW
Sbjct: 430 AQAFIQKIEVGMVGINVPIPVPMAWHSFGGWKASLFGDHHIYGEEGVRFYTRYKAIMQRW 489
Query: 482 PQRKSHEAAQFAFPSN 497
P +S + +F P N
Sbjct: 490 PGSES-KGPEFVMPVN 504
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 737
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 505
Length adjustment: 34
Effective length of query: 464
Effective length of database: 471
Effective search space: 218544
Effective search space used: 218544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Align candidate WP_041099671.1 SUTH_RS12545 (CoA-acylating methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.931.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.931.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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