Alignments for a candidate for glpK in Sulfuritalea hydrogenivorans DSM 22779

Align Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 (characterized)
to candidate WP_041100084.1 SUTH_RS13955 glycerol kinase GlpK

Query= SwissProt::Q9WX53
         (496 letters)



>NCBI__GCF_000828635.1:WP_041100084.1
          Length = 497

 Score =  568 bits (1463), Expect = e-166
 Identities = 281/489 (57%), Positives = 353/489 (72%), Gaps = 3/489 (0%)

Query: 3   QYILAIDQGTTSSRAILFNQKGEIVHMAQKEFTQYFPQPGWVEHNANEIWGSVLAVIASV 62
           +++LA+DQGT+SSR+ILF+ +G +V MAQ+EF Q FPQPGWVEH+  EIW S LA     
Sbjct: 5   RFLLALDQGTSSSRSILFDTQGRVVAMAQREFRQIFPQPGWVEHDPREIWNSQLATAQEA 64

Query: 63  LSEAQVKPEQVAGIGITNQRETTVVWVKDTGNPIYNAIVWQSRQTAGICDELKAKGYDPL 122
           L +A V    VA +GITNQRETT+VW + TG P+ NAIVWQ R+T   C  L+A+G++ +
Sbjct: 65  LGKAGVGAADVAALGITNQRETTLVWNRGTGEPLCNAIVWQDRRTEPACAALRARGFEAM 124

Query: 123 FREKTGLLIDAYFSGTKVKWILDHVEGARERAERGELLFGTIDTWLIWKLSGGRAHVTDY 182
            RE+TGL+IDAYFSGTK+KWILD+V GAR+ A+RGEL FGT+D WL W+L+GG AH TD 
Sbjct: 125 VRERTGLVIDAYFSGTKLKWILDNVPGARDAAKRGELAFGTVDCWLAWQLTGGAAHATDV 184

Query: 183 SNASRTLMFNIHTLEWDDELLAILNVPKAMLPEVRPSSEVYAKTVPHHFFGVEVPIAGAA 242
           SNASRTL+F+IH  +WDDELLA+L++P  +LPEV  SS +Y  T     FG  + I G A
Sbjct: 185 SNASRTLLFDIHRNQWDDELLAMLDIPHEVLPEVHASSHLYGHT-QAGLFGAPIAIGGMA 243

Query: 243 GDQQAALFGQACFTEGMAKNTYGTGCFMLMNTGEKAVQSKHGLLTTIAWGIDGKVEYALE 302
           GDQQ+ALFGQACF+ G+AKNTYGTGCFMLM+TGE+   S +GL+TT A  I+   EYALE
Sbjct: 244 GDQQSALFGQACFSAGLAKNTYGTGCFMLMHTGEECRASSNGLITTSAAQINATPEYALE 303

Query: 303 GSIFVAGSAIQWLRDGLRMIKTAADSEAYAEKVESTDGVYVVPAFVGLGTPYWDSEVRGA 362
           GS+F+ G+ +QWLRDGL  IK +   +  AE V  + GV  VPAF GLG PYW  + RGA
Sbjct: 304 GSVFIGGAVVQWLRDGLHAIKGSEAVQNLAESVPDSGGVMFVPAFTGLGAPYWKPDARGA 363

Query: 363 VFGLTRGTTKEHFIRATLESLAYQTKDVLAAMEADSGIS--LTTLRVDGGAVKNNFLMQF 420
           + GL+RGTT  H  RA LES+A+Q+  +L AM  D   S  +T LRVDGGA  NN LMQF
Sbjct: 364 ILGLSRGTTVAHIARAALESIAFQSAALLQAMSRDLAGSGGVTELRVDGGACVNNLLMQF 423

Query: 421 QSDLLAVPVERPVINETTALGAPYLAGLAVGYWNSRDDIAAQWQLERRFEPKMDDDKRTM 480
           Q+DLL +PV RP + ETTALGA YLAGL+ G + S D++AA WQ ER F P M   +   
Sbjct: 424 QADLLGIPVVRPKVIETTALGAAYLAGLSCGVYASLDELAAHWQAERVFHPTMSRQRAGE 483

Query: 481 LYDGWKKAV 489
           L   W+ AV
Sbjct: 484 LMQNWEHAV 492


Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 757
Number of extensions: 32
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 497
Length adjustment: 34
Effective length of query: 462
Effective length of database: 463
Effective search space:   213906
Effective search space used:   213906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_041100084.1 SUTH_RS13955 (glycerol kinase GlpK)
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.18802.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18802.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.