Alignments for a candidate for glk in Sulfuritalea hydrogenivorans DSM 22779

Align Glucokinase; EC 2.7.1.2; Glucose kinase (uncharacterized)
to candidate WP_041100583.1 SUTH_RS15770 glucokinase

Query= curated2:Q7P1R6
         (348 letters)



>NCBI__GCF_000828635.1:WP_041100583.1
          Length = 310

 Score =  175 bits (444), Expect = 1e-48
 Identities = 103/307 (33%), Positives = 155/307 (50%), Gaps = 11/307 (3%)

Query: 12  LLGDVGGSNARFALETAPGVIEDILTLSNERYPTLEDALRDYLAQVGA--RRVAHAAIGI 69
           L GD+GG+     L     +  D   ++N  +      L  +LA+       +    + +
Sbjct: 3   LCGDIGGTKTLLGLFQGDELRVD-RRIANADFQDFASLLASFLAETRTDPSLIRGGCLAV 61

Query: 70  ANPL--NGDLVRMTNCHWSFSIEATRRALGLSTLLLLNDFTALALALPRLPRRELAQVGG 127
           A P+  +G   R+TN  W+   +A     GL  L L NDF A AL          A +  
Sbjct: 62  AGPIADDGRSARLTNLPWTIDSDALAHDFGLPVLHLANDFAAAALGAVTASSAHKATLQS 121

Query: 128 GAPRPDAPLALIGPGTGLGVSALVPHAGGWRALAGEGGHTSFAPANEREIGIWRYASARF 187
           GAP   AP  ++G GTGLG++ ++P  G WR LAGEGGH +FAPA+  +  +W + +AR 
Sbjct: 122 GAPLAAAPRLVVGAGTGLGMAIVLPQDGRWRVLAGEGGHVAFAPADGEQAALWSFLNARH 181

Query: 188 GHVSHERLLSGSGLSLLHRALCALDGAEEAGLAPAEVSARGLSGADARCREALEIFCALL 247
           G V+ ER++SG GL+ +H  +  ++      L P E++ R L   D   R +L +F A  
Sbjct: 182 GRVTWERVVSGPGLTSIHAFIAGIE------LPPEEIATRALDDPDTLERRSLNMFLAAY 235

Query: 248 GSAAGNLALTLGARGGVYIGGGIVPRLSGFFEQSPFRRRFEDKGRMSAYLADIPVYLITS 307
           G+ AG++AL    RGGV++ GGI  RL    +  PF   F  K   +A  A +PV+++T 
Sbjct: 236 GAFAGDMALACLPRGGVFLAGGIAARLLPALQHGPFLAAFNAKAEHAAIAARMPVHVVTD 295

Query: 308 AYPALPG 314
               L G
Sbjct: 296 PLLGLRG 302


Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 294
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 310
Length adjustment: 28
Effective length of query: 320
Effective length of database: 282
Effective search space:    90240
Effective search space used:    90240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041100583.1 SUTH_RS15770 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.10818.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10818.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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