Alignments for a candidate for proB in Desulfotalea psychrophila LSv54

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_041278024.1 DP_RS13145 glutamate 5-kinase

Query= BRENDA::Q6E235
         (370 letters)



>NCBI__GCF_000025945.1:WP_041278024.1
          Length = 383

 Score =  253 bits (647), Expect = 5e-72
 Identities = 154/369 (41%), Positives = 224/369 (60%), Gaps = 10/369 (2%)

Query: 2   KKQRIVVKIGSSSLTNSNGSIDEAKIKEHTEAISLLKENGHEVILITSGAVAAGFSALGY 61
           K +R+VVK+GS+ LTN  G I  + I +    IS L+++GHEVIL++SGAVAAG   + +
Sbjct: 17  KARRVVVKVGSAILTNVGG-IHTSFIADLAREISYLRQSGHEVILVSSGAVAAGRKKISW 75

Query: 62  P-ARPVTIKGKQAAAAVGQTLLMQQYMDHLKRYGLTPAQILLTRNDFSKRERYRNAYATV 120
             + P+ +K KQA AA+GQ+ LM+ Y +    Y L  AQILLT  D S R+RY N   T+
Sbjct: 76  QDSAPLGMKEKQALAAIGQSHLMRTYEEAFGFYELDVAQILLTHADLSHRDRYLNIRNTI 135

Query: 121 MELLERGVVPIINENDSTSVEELTFGDNDMLSALVSGLIHADQLMILTDINGLYDANPNE 180
           + LL+ GV PIINEND+ SVEEL FGDND L+AL++ L+ AD  + LTD++ LYD NP +
Sbjct: 136 LTLLKFGVTPIINENDTVSVEELKFGDNDTLAALLTNLLEADICICLTDVDALYDKNPQK 195

Query: 181 NPDAKRFDYLTDITPELLGYAGSAGSKVGTGGMKSKFLAAQTALSLGVKVFIGTGAGREK 240
           +P A+    +T I+PE+   AG++ S  GTGGM+SK  AA+   S G    IG G     
Sbjct: 196 DPTARPLHIVTKISPEIEAMAGNSNSLFGTGGMQSKIRAAKIVFSGGGTAIIGPGRAPRV 255

Query: 241 LKVILDGKGDGT-YIGDKELSTVNNTRQWIMFHSPISGEIIIDGGAEQAMIHNGSSLLPA 299
           L+ +  G+  GT ++  KE   + + +QWI       G +++D GA +A++  G SLLP+
Sbjct: 256 LQRLFAGEDIGTIFLPCKE--RMKSKKQWIAHVLKPKGTLLLDAGACKALLQGGKSLLPS 313

Query: 300 GVADVCGSFPKGAVVE-VRGPGGIIGKGQTHYSSDEILEAKGKRSDQLPGAKQV----EV 354
           G+  + G F +G  V   R  G  I  G  +Y+S ++   KG +S ++    +     EV
Sbjct: 314 GIVGISGEFDRGDSVNCCRLDGSRIAVGLVNYASVDVNAIKGLQSREIASVLKCCDNEEV 373

Query: 355 IHRNDWVNL 363
           IHR++ V L
Sbjct: 374 IHRDNLVIL 382


Lambda     K      H
   0.314    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 383
Length adjustment: 30
Effective length of query: 340
Effective length of database: 353
Effective search space:   120020
Effective search space used:   120020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_041278024.1 DP_RS13145 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.6494.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6494.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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