Alignments for a candidate for hisH in Desulfobacca acetoxidans DSM 11109

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_041283727.1 DESAC_RS01430 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::Miya:8501586
         (212 letters)



>NCBI__GCF_000195295.1:WP_041283727.1
          Length = 212

 Score =  195 bits (495), Expect = 6e-55
 Identities = 102/206 (49%), Positives = 133/206 (64%), Gaps = 1/206 (0%)

Query: 1   MLAILDYKAGNQTSVRRALDHLGIPCVITADPAVIAGAHGVIFPGVGAAGQAMNELLTTG 60
           M+A+LDY+AGN  SV R+L  L     +  +PA +  A  VIFPGVGAAGQAM  +   G
Sbjct: 1   MIAVLDYEAGNLASVIRSLIALEAQATVIRNPAGVEQADRVIFPGVGAAGQAMANIRRFG 60

Query: 61  LDKVLKDQVQAGKPLLGICVGCQIMLDYSQENDTKALGIVPGECRLFNAAWTEEDGTPIR 120
           LD+ L+   + GKP+LGIC+G QI+L +S ENDT  LG++PGE R       +  G  ++
Sbjct: 61  LDQALRHAYETGKPILGICLGAQIILHHSAENDTPCLGLLPGEVRRLIPPALDPMGRRLK 120

Query: 121 VPHMGWNSIVQKRPCELLKGIEPEAEFYFVHSYYPAPPE-SYVIATCTYGEEFCAIHGGP 179
           +PHMGWN +   R   L  G+   AEFYFVHSYYP+P + S V+    YG+EF ++ G  
Sbjct: 121 IPHMGWNQVRFLRRHPLFVGLPEGAEFYFVHSYYPSPADASQVLGITDYGQEFPSVIGYK 180

Query: 180 GLWAVQFHPEKSGRPGLALLRNFYAY 205
            L A QFHPEKSGR GL LL+NF A+
Sbjct: 181 NLVATQFHPEKSGRFGLLLLKNFLAW 206


Lambda     K      H
   0.321    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 177
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 212
Length adjustment: 21
Effective length of query: 191
Effective length of database: 191
Effective search space:    36481
Effective search space used:    36481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate WP_041283727.1 DESAC_RS01430 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.4415.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4415.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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