Alignments for a candidate for ilvD in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_041314961.1 HM1_RS06870 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_000019165.1:WP_041314961.1
          Length = 552

 Score =  624 bits (1608), Expect = 0.0
 Identities = 315/553 (56%), Positives = 415/553 (75%), Gaps = 5/553 (0%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M+S T+K G+++APHRSLL   GLT ++  +P IGI N+  D+VPGHIHL  +A+AVK G
Sbjct: 1   MRSQTVKCGVEKAPHRSLLRSIGLTAEEMNRPLIGIVNAKNDVVPGHIHLDTIADAVKAG 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           V  AGG    F T+A+CDGIAMNH GMKYSLASRE++AD++E M MAH  D LV +P CD
Sbjct: 61  VRLAGGTPLAFPTIAVCDGIAMNHTGMKYSLASRELIADSIEVMTMAHGFDALVFIPNCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           K+VPGMLMAAARL+IP+I V+GGPML G F+G+KV+L  V+EGVG  + G+M+ +ELEEL
Sbjct: 121 KVVPGMLMAAARLNIPSIFVSGGPMLAGRFQGKKVNLNTVFEGVGQYNTGKMTMEELEEL 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           E+ ACP   SC+G+FTAN+M CLTE LGMSLPG  T  AV S +  +A+ +G RI++++ 
Sbjct: 181 EKNACPTCGSCSGMFTANSMNCLTEVLGMSLPGNGTIPAVYSARILLAKQTGMRIMDLLA 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300
            N++P  +M++  F NAV VD+ALG STNT LH+PAIA E  G+ +NLD+ +E+S   PH
Sbjct: 241 NNVRPLDMMTEGTFRNAVTVDMALGCSTNTLLHLPAIAHEA-GVELNLDMVNEISAKTPH 299

Query: 301 IASISPAGEHMMLDLDRAGGIPAVLKTLEDH--INRECVTCTGRTVQENIENVKVGHRDV 358
           +  ++PAGEH + DL  AGGIPAV+K+L +   I+ +  T TG+TV EN+ +V     DV
Sbjct: 300 LCKLAPAGEHHIEDLYEAGGIPAVMKSLLEAGLIDGDLPTVTGKTVAENVASVVNLRPDV 359

Query: 359 IRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGG 418
           IRPLD+P    GGLA+LRGNLAP G+VVK+GAVA +M+VH+GPA+VF+SE++   AI GG
Sbjct: 360 IRPLDNPYSKTGGLAVLRGNLAPDGAVVKKGAVAPEMLVHKGPARVFDSEEQAYAAITGG 419

Query: 419 RIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGLER-VALITDGRFSGGTRGPCVGHV 477
           RI +GDV+VIRYEGP+GGPGMREML+PTS I GMGL++ VALITDGRFSG TRG  +GHV
Sbjct: 420 RIQKGDVVVIRYEGPRGGPGMREMLSPTSTICGMGLDKDVALITDGRFSGATRGAAIGHV 479

Query: 478 SPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSV-KGWLARYR 536
           SPEA + GP+A + +GDII IDIP+ +L+V++   E+ ER +    P   V  G++ RY 
Sbjct: 480 SPEAADGGPIAFIREGDIIAIDIPAGRLDVEVDAAELAERRKEWQPPAPKVTSGYMKRYA 539

Query: 537 KLAGSADTGAVLR 549
           +   SA TGA +R
Sbjct: 540 QNVLSASTGARMR 552


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 977
Number of extensions: 50
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 552
Length adjustment: 36
Effective length of query: 513
Effective length of database: 516
Effective search space:   264708
Effective search space used:   264708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_041314961.1 HM1_RS06870 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.23085.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23085.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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