Alignments for a candidate for proA in Trichormus variabilis ATCC 29413

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; GSA dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_041456549.1 AVA_RS00285 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P54885
         (456 letters)



>NCBI__GCF_000204075.1:WP_041456549.1
          Length = 434

 Score =  342 bits (876), Expect = 2e-98
 Identities = 194/448 (43%), Positives = 274/448 (61%), Gaps = 23/448 (5%)

Query: 2   SSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLA 61
           SS   IA+  R+A ++L  +S E ++  +  +  AL++    I +AN  D   A   G+A
Sbjct: 8   SSLNDIAQQTRQAASLLAMLSTEAKNQAIAAVAQALESAKEEILQANIADCEAATAEGIA 67

Query: 62  DSLLKRLDLFKGDKFEVMLQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVI 121
             L KRL L +  K    + G++DV +L DP+G+V++ RELD GL L ++T P+GVL +I
Sbjct: 68  KPLYKRLQLDE-HKLRDAIAGVRDVGKLADPIGQVQIQRELDTGLVLKRITCPLGVLGII 126

Query: 122 FESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAKIVNDTIAQFQSETGVPVGSVQ 181
           FE+RPE    I +L+IKSGN  ILK GKE+V +   + K V   +    S T V    VQ
Sbjct: 127 FEARPEAAIQIISLAIKSGNGVILKCGKEAVRSCEAIVKAVKQGL----STTDVNPDVVQ 182

Query: 182 LIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLI 241
           L+ TR++  +LL  D+Y+DL++PRGSN+ VR +++ T+IPVLGHADGIC +Y+D+ AD+ 
Sbjct: 183 LLTTREETLELLRLDKYVDLIIPRGSNSFVRFVQENTRIPVLGHADGICHVYIDKSADIE 242

Query: 242 KAKRISLDAKTNYPAGCNAMETLLINPKFSKWWEVLENLTLEGGVTIHATKDLKTAYFDK 301
           KA  +S+DAK  YPA CNA+ETLL++   +   E L  +                A  ++
Sbjct: 243 KAIAVSVDAKVQYPAACNAIETLLVHHSIAA--EFLPKVA--------------QALAER 286

Query: 302 LNELGKLTEAIQC-KTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAI 360
             EL      +Q    + A    D++ E+    L+ K V S   AI HIN + SRHTDAI
Sbjct: 287 QVELKGDERTLQILPEIAAATAIDWETEYSDFILSIKIVDSLTEAIAHINQYGSRHTDAI 346

Query: 361 VTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVS 420
           +TE+ A  E F   V+S+GV+ N STRFADGFRYGFGAEVGIST ++  RGPVGL+GLV+
Sbjct: 347 ITEDVAAVETFFGLVNSAGVFHNCSTRFADGFRYGFGAEVGISTQQMPPRGPVGLEGLVT 406

Query: 421 YQYQIRGDGQVASDYLGAGGNKAFVHKD 448
           Y+YQ+ G G + + Y G    K F H+D
Sbjct: 407 YKYQMTGTGHIVATYTGENA-KPFTHQD 433


Lambda     K      H
   0.315    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 434
Length adjustment: 32
Effective length of query: 424
Effective length of database: 402
Effective search space:   170448
Effective search space used:   170448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)

Align candidate WP_041456549.1 AVA_RS00285 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.1585.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1585.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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