Alignments for a candidate for OAT in Trichormus variabilis ATCC 29413

Align Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 (characterized)
to candidate WP_041457309.1 AVA_RS26830 ornithine--oxo-acid transaminase

Query= SwissProt::P38021
         (401 letters)



>NCBI__GCF_000204075.1:WP_041457309.1
          Length = 400

 Score =  495 bits (1274), Expect = e-144
 Identities = 233/395 (58%), Positives = 308/395 (77%), Gaps = 3/395 (0%)

Query: 7   SKEIIDQTSHYGANNYHPLPIVISEALGAWVKDPEGNEYMDMLSAYSAVNQGHRHPKIIQ 66
           +++ I+    YGA+NYHPL +VI++  G WV D EG +Y+D LSAYSA+NQGH HPKI+Q
Sbjct: 3   TQDYIELEQQYGADNYHPLDVVITKGEGVWVWDIEGKKYLDFLSAYSALNQGHCHPKILQ 62

Query: 67  ALKDQADKITLTSRAFHNDQLGPFYEKTAKLTGKEMILPMNTGAEAVESAVKAARRWAYE 126
           A+  QA ++TLTSRAF NDQLG FY+K  +++G   +LPMN+GAEAVE+A+KA R+WAY+
Sbjct: 63  AMIKQAQQVTLTSRAFRNDQLGKFYQKLCQISGLPKVLPMNSGAEAVETAIKAIRKWAYK 122

Query: 127 VKGVADNQAEIIACVGNFHGRTMLAVSLSSEEEYKRGFGPMLPGIKLIPYGDVEALRQAI 186
           VKG+ +NQAEII C  NF GRT+  +S S+EE+Y+ GFGP+  G K+IP+GD +AL QAI
Sbjct: 123 VKGIPENQAEIIVCSNNFSGRTISLISFSTEEQYQDGFGPLTTGFKVIPFGDAQALEQAI 182

Query: 187 TPNTAAFLFEPIQGEAGIVIPPEGFLQEAAAICKEENVLFIADEIQTGLGRTGKTFACDW 246
           TPNTAAFL EPIQGE GI++PP GFL++A  IC+  +VL + DEIQTGLGRTGK FA  +
Sbjct: 183 TPNTAAFLVEPIQGEGGIIVPPHGFLKQAEQICRHHHVLLVFDEIQTGLGRTGKMFAHQY 242

Query: 247 DGIVPDMYILGKALGGGVFPISCIAADREILGVFNPGSHGSTFGGNPLACAVSIASLEVL 306
           + + PD   +GKAL GG +PIS   +  E++G+F PG HGSTFGGNPLA A+ IA+L+VL
Sbjct: 243 ENVKPDGITVGKALSGGFYPISAFISTEEVMGIFQPGDHGSTFGGNPLAAAIGIAALDVL 302

Query: 307 EDEKLADRSLELGEYFKSELESIDSPVIKEVRGRGLFIGVEL---TEAARPYCERLKEEG 363
            +EKL +++L+LGEYF  +L+SI+S  IKEVRG+GL IG+EL      AR +C+ L +EG
Sbjct: 303 IEEKLPEKALKLGEYFIEKLQSIESTYIKEVRGKGLLIGMELYPEAGGARRFCKALAKEG 362

Query: 364 LLCKETHDTVIRFAPPLIISKEDLDWAIEKIKHVL 398
           LL KET D VIRFAPPL+IS++++DWA+EKI+ VL
Sbjct: 363 LLAKETRDNVIRFAPPLVISEDEIDWALEKIERVL 397


Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 499
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 400
Length adjustment: 31
Effective length of query: 370
Effective length of database: 369
Effective search space:   136530
Effective search space used:   136530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041457309.1 AVA_RS26830 (ornithine--oxo-acid transaminase)
to HMM TIGR01885 (rocD: ornithine--oxo-acid transaminase (EC 2.6.1.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.21765.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21765.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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