Alignments for a candidate for argC in Nostoc punctiforme ATCC 29133; PCC 73102

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_041565990.1 NPUN_RS07920 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Korea:Ga0059261_0351
         (310 letters)



>NCBI__GCF_000020025.1:WP_041565990.1
          Length = 322

 Score =  295 bits (754), Expect = 1e-84
 Identities = 155/317 (48%), Positives = 207/317 (65%), Gaps = 13/317 (4%)

Query: 5   VFIDGAAGTTGLEIRERLATRSDISLIGLDDAHRKDAGKRAEAINSADFVILCLPDDAAR 64
           +FIDG +GTTGL+I  RL  R DI L+ ++ + RKDA +RA+ IN+ D VILCLPDDAAR
Sbjct: 6   IFIDGESGTTGLQIYSRLNQRDDIELVSIEASKRKDASERAKLINTVDVVILCLPDDAAR 65

Query: 65  EAVALIANDTTRVIDASTAHRVADGWTYGFAELEPAQAAAIAEARYVSNPGCWPTGFLAL 124
           EAV+L+++ T +++DAS+AHR A+GW YGF EL P Q   IA A+YVSNPGC+PTGFLA 
Sbjct: 66  EAVSLVSSTTVKILDASSAHRTANGWVYGFPELNPGQREKIASAQYVSNPGCYPTGFLAC 125

Query: 125 VRPLVRAGLIPPDWVLTAGGASGYSGGGKSMIAEFE-------DGSEPTGFRAYGLDLEH 177
           +RPL+  GL   ++ +T    SGYSGGGK++I ++         G     F  YGL   H
Sbjct: 126 IRPLIAKGLFKSNFPITVNAVSGYSGGGKNLIKQYHTFHEQQAGGESLYPFGIYGLQFGH 185

Query: 178 KHLPEMQKHARIDHAPIFQPAVARSYRGMLIEVPLPLQMLPRKPAPAQIEQVLADAYRDS 237
           KH+ EM  ++ +   P+F P+V    +GML++VPLPL  L   P+   I + +AD Y+  
Sbjct: 186 KHVKEMHYYSGLASPPLFVPSVGDFEQGMLVQVPLPLGTLDNPPSGEVIYEAIADYYQGE 245

Query: 238 PIVRVLPSDDVSLVR--IEDDA----GTDRLTIRVFGNAERGQARLVATLDNLGKGAGGA 291
             V+V P  D +L+R  I  DA    GT+ + + VF N    +A LVA LDNLGKGA GA
Sbjct: 246 KFVQVAPFQDSTLLRDGIFLDAIAVNGTNIVQVFVFANDTTKEALLVARLDNLGKGASGA 305

Query: 292 AVQNLNIMAGFDQTAGL 308
           A+QNLNIM GF +  GL
Sbjct: 306 AIQNLNIMLGFPEELGL 322


Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 264
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 322
Length adjustment: 27
Effective length of query: 283
Effective length of database: 295
Effective search space:    83485
Effective search space used:    83485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_041565990.1 NPUN_RS07920 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.6420.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6420.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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