Alignments for a candidate for carA in Teredinibacter turnerae T7901

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_041590260.1 TERTU_RS14580 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000023025.1:WP_041590260.1
          Length = 407

 Score =  550 bits (1416), Expect = e-161
 Identities = 274/373 (73%), Positives = 308/373 (82%), Gaps = 6/373 (1%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           A+LVLEDG+ F G +IGATG +VGEVVFNTS+TGYQEILTDPSY+RQIVTLTYPHIGN G
Sbjct: 34  AILVLEDGSVFRGVSIGATGKSVGEVVFNTSITGYQEILTDPSYARQIVTLTYPHIGNTG 93

Query: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
           TN  DEE   + A GLVIRDLPL+ASNFRN++ L  YL   NI+ IADIDTR+LTRLLR+
Sbjct: 94  TNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRD 153

Query: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGL-PE 183
           KGA  GCI+AGD  D A ALE AR F GL GMDLAKEV+T + Y W  GSW L  G  P 
Sbjct: 154 KGALAGCIMAGD-VDEAEALETARGFAGLQGMDLAKEVSTKDTYQWRDGSWKLGSGYAPL 212

Query: 184 AKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPG 243
           A+K     F+VVAYD+GAK NILRMLVDRGC LT+VPAQT A DVL MNPDG+FLSNGPG
Sbjct: 213 AEKR----FNVVAYDYGAKSNILRMLVDRGCDLTVVPAQTPAADVLAMNPDGVFLSNGPG 268

Query: 244 DPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKN 303
           DP PCDYAI AI+  L  ++P+FGICLGHQLLALASGAKT+KMKFGHHGGNHPV++V+  
Sbjct: 269 DPEPCDYAIDAIKVLLNENMPIFGICLGHQLLALASGAKTIKMKFGHHGGNHPVQNVKTG 328

Query: 304 VVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDA 363
            VMIT+QNHGFA DE+TLP  L  THKSLFDG+LQGIHRTDKPAFSFQGHPEASPGPHDA
Sbjct: 329 EVMITSQNHGFAADESTLPDCLEATHKSLFDGSLQGIHRTDKPAFSFQGHPEASPGPHDA 388

Query: 364 APLFDHFIELIEQ 376
           A LFDHFIEL++Q
Sbjct: 389 AELFDHFIELMQQ 401


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 407
Length adjustment: 31
Effective length of query: 351
Effective length of database: 376
Effective search space:   131976
Effective search space used:   131976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041590260.1 TERTU_RS14580 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.13696.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13696.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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