Alignments for a candidate for asd in Azoarcus olearius BH72

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_041642359.1 AZO_RS05290 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q51344
         (370 letters)



>NCBI__GCF_000061505.1:WP_041642359.1
          Length = 377

 Score =  530 bits (1364), Expect = e-155
 Identities = 270/376 (71%), Positives = 308/376 (81%), Gaps = 7/376 (1%)

Query: 1   MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVG-KDIA-PLKDAY 58
           MKRVGL+GWRGMVGSVLMQRM++E DF  IEPV+F+TS  GG+ P  G K+ A PL+DA 
Sbjct: 1   MKRVGLVGWRGMVGSVLMQRMVDEGDFAHIEPVYFSTSAAGGKAPVFGGKEAALPLQDAT 60

Query: 59  SIDELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKV 118
           SID LK  D+I+TCQGGDYT EVFPKLR +GW G+WIDAAS+LRM DDAVI+LDPVN  V
Sbjct: 61  SIDALKACDIIITCQGGDYTKEVFPKLRASGWDGHWIDAASALRMADDAVIILDPVNMHV 120

Query: 119 IDQALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQ 178
           I  AL  G +N+IGGNCTVSLMLM LGGLF   LVEW+SAMTYQAASGAGAQNMREL+ Q
Sbjct: 121 IKDALAKGGKNWIGGNCTVSLMLMGLGGLFKHDLVEWVSAMTYQAASGAGAQNMRELIAQ 180

Query: 179 MGAAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHF-GAPLGGSLIPWIDKELPNG 237
           MG  HASVAD LA+PASAILDIDRKVAET+RS++FP ++F   PL GSLIPWID  +  G
Sbjct: 181 MGTIHASVADLLADPASAILDIDRKVAETIRSDSFPKKNFRNTPLAGSLIPWIDVPVDGG 240

Query: 238 QSREEWKAQAETNKILA----RFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIE 293
           QS+EEWK  AE NKIL     R +  IP+DG+CVR+GAMRCHSQ LTIKL KDVPL ++ 
Sbjct: 241 QSKEEWKGGAECNKILGKPAFRSQGSIPIDGLCVRIGAMRCHSQGLTIKLKKDVPLDEVT 300

Query: 294 GLISQHNPWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLL 353
            +I+  N WVK+VPN RE+S RELTPAAVTGTL+VPVGRL KL MG  YLGAFTVGDQLL
Sbjct: 301 EIIATANDWVKVVPNEREISERELTPAAVTGTLTVPVGRLHKLAMGPDYLGAFTVGDQLL 360

Query: 354 WGAAEPLRRMLRILLE 369
           WGAAEPLRRMLRILL+
Sbjct: 361 WGAAEPLRRMLRILLD 376


Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 559
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 377
Length adjustment: 30
Effective length of query: 340
Effective length of database: 347
Effective search space:   117980
Effective search space used:   117980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_041642359.1 AZO_RS05290 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.7374.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7374.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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