Alignments for a candidate for serB in Rhodopseudomonas palustris CGA009

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_042440982.1 TX73_RS10340 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_000195775.1:WP_042440982.1
          Length = 297

 Score =  150 bits (378), Expect = 3e-41
 Identities = 93/208 (44%), Positives = 121/208 (58%), Gaps = 5/208 (2%)

Query: 25  KLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALLKGVS 84
           KL   DMDST+I  EC+DE+A   G K  VAAITE AMRGEI +++ +LR+RVALLKG+ 
Sbjct: 82  KLFLADMDSTMIGQECIDELAGFVGLKDHVAAITERAMRGEI-EFEPALRERVALLKGLP 140

Query: 85  VASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTRSNVL 144
           +  + +V  TR+ L PG   +VQ  +  G    LVSGGFT FT  + + LG    R+N L
Sbjct: 141 LDVIGQVLDTRITLTPGGRAVVQTMRANGAYTCLVSGGFTQFTHVVAERLGFAEHRANEL 200

Query: 145 ETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMMGEAG 204
            + DG LTG + +     I   + K   LLE      +     + +GDGANDL M+  AG
Sbjct: 201 LSQDGKLTGTVAE----PILGRDAKLATLLELREADDLDAIDTLVVGDGANDLGMIQAAG 256

Query: 205 LSVAYHAKPRVREQAMVAINEGGLDRLL 232
           L +AYHAKP V   A   I+ G L  LL
Sbjct: 257 LGIAYHAKPAVAAAAHGRIDFGDLTALL 284


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 189
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 297
Length adjustment: 25
Effective length of query: 211
Effective length of database: 272
Effective search space:    57392
Effective search space used:    57392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_042440982.1 TX73_RS10340 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.27282.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27282.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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