GapMind for catabolism of small carbon sources

 

Protein WP_042441081.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_042441081.1

Length: 534 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 5 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-leucine catabolism liuD hi methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) (characterized) 71% 99% 773.1 propionyl-CoA carboxylase α subunit (EC 6.4.1.3) 68% 739.2
L-isoleucine catabolism pccB med propionyl-CoA carboxylase α subunit (EC 6.4.1.3) (characterized) 68% 99% 739.2 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) 71% 773.1
propionate catabolism pccB med propionyl-CoA carboxylase α subunit (EC 6.4.1.3) (characterized) 68% 99% 739.2 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) 71% 773.1
L-threonine catabolism pccB med propionyl-CoA carboxylase α subunit (EC 6.4.1.3) (characterized) 68% 99% 739.2 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) 71% 773.1
L-valine catabolism pccB med propionyl-CoA carboxylase α subunit (EC 6.4.1.3) (characterized) 68% 99% 739.2 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) 71% 773.1

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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