Alignments for a candidate for tdh in Stenotrophomonas chelatiphaga DSM 21508

Align L-threonine 3-dehydrogenase (EC 1.1.1.103) (characterized)
to candidate WP_042615137.1 ABB28_RS02015 L-threonine 3-dehydrogenase

Query= BRENDA::P07913
         (341 letters)



>NCBI__GCF_001431535.1:WP_042615137.1
          Length = 344

 Score =  468 bits (1203), Expect = e-136
 Identities = 216/341 (63%), Positives = 267/341 (78%), Gaps = 1/341 (0%)

Query: 1   MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMV 60
           MKAL K +A +GIW+ +VPVP  G N++LIK+ KTAICGTD+HIY WDEWSQ+TI   + 
Sbjct: 5   MKALVKREAAKGIWLEEVPVPVPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLT 64

Query: 61  VGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRPGC 120
           +GHE+VG V  +G  V G+++G RVS EGHI CGHCRNCRGGR HLC NT+G+GVN  G 
Sbjct: 65  IGHEFVGRVAALGSAVTGYEVGQRVSAEGHIVCGHCRNCRGGRQHLCPNTVGIGVNVNGA 124

Query: 121 FAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGEDVLVSGAGPIGIMAA 180
           FAEY+V+PA N + IPD I  +LAA FDP+GNA H AL F+++GEDVL++GAGPIGI+AA
Sbjct: 125 FAEYMVMPATNLWPIPDQIPSELAAFFDPYGNAAHCALEFNVIGEDVLITGAGPIGIIAA 184

Query: 181 AVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAELGMTEGFDVGLEMS 240
            + KH+GARNVV+TDVN++RL+LA  MG TR VNVA ++L DVM EL M EGFDVGLEMS
Sbjct: 185 GICKHIGARNVVVTDVNDFRLKLAADMGATRVVNVANQSLKDVMKELHM-EGFDVGLEMS 243

Query: 241 GAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAA 300
           G P AF  MLD M HGG+IAMLGI P     DW K+IFKGL ++GIYGR+M+ETWYKM  
Sbjct: 244 GNPRAFNDMLDCMYHGGKIAMLGIMPRGAGCDWDKIIFKGLTVQGIYGRKMYETWYKMTQ 303

Query: 301 LIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSGKVILSWD 341
           L+ SG  L  ++TH+  IDDFQKGFD M  G++GKV+LSW+
Sbjct: 304 LVLSGFPLGKVMTHQLPIDDFQKGFDLMEEGKAGKVVLSWN 344


Lambda     K      H
   0.322    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 473
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 344
Length adjustment: 29
Effective length of query: 312
Effective length of database: 315
Effective search space:    98280
Effective search space used:    98280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_042615137.1 ABB28_RS02015 (L-threonine 3-dehydrogenase)
to HMM TIGR00692 (tdh: L-threonine 3-dehydrogenase (EC 1.1.1.103))

Software error:

../bin/blast/fastacmd -i /tmp/list.30291.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30291.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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