Alignments for a candidate for cmutase in Azohydromonas australica DSM 1124

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_043459340.1 H537_RS0120230 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000430725.1:WP_043459340.1
          Length = 368

 Score =  301 bits (771), Expect = 2e-86
 Identities = 159/359 (44%), Positives = 229/359 (63%), Gaps = 10/359 (2%)

Query: 7   LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
           L  LRV ID++D  +L LI+ RA  AQ V  +K     K E +  +RPERE  V++ +  
Sbjct: 12  LPGLRVCIDAVDRELLALINRRAALAQAVGEIK-----KKEGSPVFRPEREQQVIEGLKA 66

Query: 67  LNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAA 126
           +N GPL NE +A ++RE+MS+C ALE P RVA+LGP GTFS+ AAL +FG S++  P A+
Sbjct: 67  VNPGPLRNENLAPIWRELMSACRALETPTRVAFLGPAGTFSEEAALNYFGSSIVRVPCAS 126

Query: 127 IDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETT 186
           IDEVFR   AG+ +FGVVPVENSTEGAV  ++D FL   + I GE  L + H+LL     
Sbjct: 127 IDEVFRATSAGSADFGVVPVENSTEGAVARSMDLFLTTPLSIVGETSLLVRHNLL-RLRE 185

Query: 187 KTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQ 246
             D I  + +H Q+L QC +WL  H P VER  V+SNA+ A+    + + AA+A   A  
Sbjct: 186 DLDGIQAVCAHPQALGQCHEWLSQHLPGVERRPVASNAEGARLAAQDPSLAALASVRAGN 245

Query: 247 LYGLSKLAEKIEDRPVNSTRFLIIGS---QEVP-PTGDDKTSIIVSMRNKPGALHELLMP 302
            +GL  +A  ++D P N TRF+++     Q +P P+G D TS++V++ N+PGA+ +LL+P
Sbjct: 246 EFGLHLVAPGVQDDPRNRTRFVMVADPQCQSLPAPSGMDCTSLVVAVANRPGAMVDLLVP 305

Query: 303 FHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYP 361
             + G+ +TR E+RP+RSG+W Y F++D  GH ++P +   L+ +       K+LG YP
Sbjct: 306 LKAAGVSMTRFESRPARSGQWEYYFYVDLQGHPEEPHVAQALQTLRAHCSFFKLLGGYP 364


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 325
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 368
Length adjustment: 30
Effective length of query: 335
Effective length of database: 338
Effective search space:   113230
Effective search space used:   113230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_043459340.1 H537_RS0120230 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11123.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11123.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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