Alignments for a candidate for argE in Methylobacterium nodulans ORS 2060

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_043752928.1 MNOD_RS35275 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000022085.1:WP_043752928.1
          Length = 394

 Score =  263 bits (673), Expect = 5e-75
 Identities = 145/377 (38%), Positives = 207/377 (54%), Gaps = 8/377 (2%)

Query: 6   ILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGYI 65
           +L +LV F +     N  +++++  YL   G+    +P   GD++ +FATIGP    G +
Sbjct: 13  LLERLVAFDTESAKSNLSLIAFVEAYLAGWGVPFVRVPNRAGDKAALFATIGPMRDGGVV 72

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVV  A   W+ DPFRLRV   R+ GRG  DMKGF A  LA VP++ A  LR P+
Sbjct: 73  LSGHTDVVSPAGQDWSGDPFRLRVADGRVIGRGAVDMKGFCALCLALVPEMLAAELRTPI 132

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           H+ LSYDEE  C GV  +IARL     +P   I+GEPTG+    AHK  A    TV G  
Sbjct: 133 HILLSYDEETTCLGVVDVIARLGADLPRPGAVIVGEPTGLDVADAHKSVATYVTTVHGHE 192

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRLVG-GPFEHVFEPPYSSLQIGTVKGGQAVNI 244
            HS++P  G NAI   A ++ +    AD+++  G     F+PPY+++ +G + GG   NI
Sbjct: 193 AHSAKPALGANAIMAAAELVAELNRIADQMIARGDPSGRFDPPYTTVHVGVIGGGTVRNI 252

Query: 245 IPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGF-------EVEWQELSAYPALSL 297
           +P +C  E+E R +  +D  E+   +   AE +T            +E  + ++ P L+ 
Sbjct: 253 LPKTCAFEWEFRGLPDLDLDEIPRRMAAHAETVTRERLNRFGPYGSIETVQDASVPGLAP 312

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
           EP +P   L   + GR    +V Y TEAG FQRAG+  ++CGPG I +AH+PDEYI +  
Sbjct: 313 EPGSPAERLALRVAGRNRTISVPYATEAGRFQRAGLPTVVCGPGSIDQAHQPDEYITLAA 372

Query: 358 LMACRAMVEALGARCTA 374
             A    +  L   C A
Sbjct: 373 FEAGEIFLRGLIRECAA 389


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 426
Number of extensions: 24
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 394
Length adjustment: 30
Effective length of query: 344
Effective length of database: 364
Effective search space:   125216
Effective search space used:   125216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_043752928.1 MNOD_RS35275 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.32473.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32473.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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