Alignments for a candidate for asp-kinase in Algiphilus aromaticivorans DG1253

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_043766295.1 U743_RS05770 aspartate kinase

Query= BRENDA::O69077
         (412 letters)



>NCBI__GCF_000733765.1:WP_043766295.1
          Length = 412

 Score =  556 bits (1433), Expect = e-163
 Identities = 288/405 (71%), Positives = 331/405 (81%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFREAGDDVVVVVSAMSGETNRLIGLANQIMEQ 60
           MAL+VQK+GGTSVG  +RI  VA+KV   R  GD VVVVVSAMSGETNRLIGL  ++   
Sbjct: 1   MALLVQKYGGTSVGDTKRICHVADKVAAARARGDQVVVVVSAMSGETNRLIGLVGEVSAA 60

Query: 61  PVPRELDVMVSTGEQVTIALLSMALIKRGVPAVSYTGNQVRILTDSAHTKARILHIDDTH 120
           P  RE D +V+TGEQVTI LL++AL  RGV A S+ G+QV I TDSAH KARI  I+   
Sbjct: 61  PSQREYDQIVATGEQVTIGLLAIALQARGVSARSFLGHQVPIRTDSAHGKARIRKIETEA 120

Query: 121 IRADLKAGRVVVVAGFQGVDGNGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           +R  L  G V VVAGFQGVD  GNITTLGRGGSDTTGVALAAAL ADECQIYTDVDGVYT
Sbjct: 121 LRVTLDEGAVAVVAGFQGVDDAGNITTLGRGGSDTTGVALAAALGADECQIYTDVDGVYT 180

Query: 181 TDPRVVPQARRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFQEGPGTLI 240
           TDPRV P+ARRL +ITFEEMLE+ASLGSKVLQIRAVEFAGKY VPLRVL +F+EGPGTLI
Sbjct: 181 TDPRVEPRARRLSQITFEEMLELASLGSKVLQIRAVEFAGKYRVPLRVLSTFEEGPGTLI 240

Query: 241 TIDDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVA 300
           T+D E   +E+P+ISGIAFNRDEA++T++GVPD PG+A ++LGPI AAN+EVDMIVQNV 
Sbjct: 241 TLDQESNGVEEPLISGIAFNRDEAQITLQGVPDRPGIAARVLGPIGAANIEVDMIVQNVG 300

Query: 301 HDNTTDFTFTVHRNDYLNALEILKQTAANIGAREAIGDTNIAKVSIVGVGMRSHAGVASR 360
            D TTDFTFTVH+NDY  A  ++     ++GAR A GD NIAK+S+VGVGMRSHAG+AS 
Sbjct: 301 ADGTTDFTFTVHKNDYARARALMDDICRDLGARSATGDDNIAKLSVVGVGMRSHAGIASE 360

Query: 361 MFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 405
           MF ALA E+INI+MISTSEIK+SVVIEEKY+ELAVR LH AF LD
Sbjct: 361 MFNALAAENINIRMISTSEIKISVVIEEKYVELAVRTLHRAFRLD 405


Lambda     K      H
   0.317    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 540
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 412
Length adjustment: 31
Effective length of query: 381
Effective length of database: 381
Effective search space:   145161
Effective search space used:   145161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_043766295.1 U743_RS05770 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.31637.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31637.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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