Alignments for a candidate for dapD in Algiphilus aromaticivorans DG1253

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate WP_043766362.1 U743_RS05975 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= CharProtDB::CH_024869
         (274 letters)



>NCBI__GCF_000733765.1:WP_043766362.1
          Length = 273

 Score =  351 bits (901), Expect = e-102
 Identities = 181/272 (66%), Positives = 220/272 (80%), Gaps = 3/272 (1%)

Query: 3   QLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKI-DGQWVTHQWLKK 61
           +LQ+ IE A+E R  ITPAN +    E+V   I LLDSG  RVAE   +G W  ++WLKK
Sbjct: 4   ELQSAIEQAWEARDSITPANREVA--ESVEACIQLLDSGQGRVAEPDGNGGWRVNEWLKK 61

Query: 62  AVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARNT 121
           AVLLSFR+  N+ +E    R +DKVP+K+A++ EA F+ +G RVVPPAAVR+GA+IA N 
Sbjct: 62  AVLLSFRLQGNEPVEMGALRGWDKVPLKYANWSEADFRDQGARVVPPAAVRRGAYIAPNV 121

Query: 122 VLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 181
           VLMPS+VNIGA+V +GTMVDTWA++GSCAQIG NVH+S G GIGGVLEPLQANPTIIED+
Sbjct: 122 VLMPSFVNIGAWVGKGTMVDTWASIGSCAQIGSNVHVSAGAGIGGVLEPLQANPTIIEDD 181

Query: 182 CFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSK 241
           CFIGARSE+VEGV+VE+GSVISMGV+I QST IYDRE+GEI  GRVPAGSVVV+G+LP  
Sbjct: 182 CFIGARSEIVEGVVVEQGSVISMGVFITQSTPIYDRESGEILRGRVPAGSVVVAGSLPRD 241

Query: 242 DGKYSLYCAVIVKKVDAKTRGKVGINELLRTI 273
           +G YS+ CAVIVK+VDA TR KVG+N LLR +
Sbjct: 242 NGAYSINCAVIVKRVDAATRAKVGLNALLRDV 273


Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 286
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 273
Length adjustment: 25
Effective length of query: 249
Effective length of database: 248
Effective search space:    61752
Effective search space used:    61752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_043766362.1 U743_RS05975 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.30770.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30770.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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