Alignments for a candidate for cmutase in Algiphilus aromaticivorans DG1253

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_043766422.1 U743_RS06095 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000733765.1:WP_043766422.1
          Length = 368

 Score =  337 bits (864), Expect = 3e-97
 Identities = 180/364 (49%), Positives = 235/364 (64%), Gaps = 9/364 (2%)

Query: 5   DQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHI 64
           D+L   R RID+LD  I + + ERAR AQEV  +K  +   ++    YRP REA VLK  
Sbjct: 4   DRLSQARSRIDALDAEIQERVVERARVAQEVRDIKREAGDLSDH---YRPAREAQVLKAA 60

Query: 65  MELNKG---PLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVIS 121
           +E NK    PL    M  + REIMS+CLALE PL V+YLGPEGT++Q+A  KHFGH V +
Sbjct: 61  VERNKALGSPLSQAAMTSIMREIMSACLALESPLSVSYLGPEGTYTQSAVYKHFGHQVST 120

Query: 122 KPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLL 181
           +   AID++FR+V +G   +GVVPVENSTEG V+ TLD  L   + ICGEV L +HHHLL
Sbjct: 121 RVAPAIDDIFRDVESGTAAYGVVPVENSTEGVVSSTLDLLLATPLSICGEVMLPVHHHLL 180

Query: 182 VGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAG 241
            G      RI  +Y+H QS AQCR+WLD + PN  R  ++SN  AA+RV      AAIA 
Sbjct: 181 SGHEDMA-RIDVVYAHPQSFAQCRRWLDNNLPNTPREPMASNGAAARRVAETKRGAAIAS 239

Query: 242 DMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVS--MRNKPGALHEL 299
             A  LYGL++LA  IED P N+TRFL+IG Q+  PTG D+TS++ S     +PGAL  L
Sbjct: 240 AAAGVLYGLNELAANIEDDPNNTTRFLVIGRQQPEPTGADRTSLVCSAPQGGEPGALFSL 299

Query: 300 LMPFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGS 359
           L PF   G++L++IE+RPSR   W Y F++D  GH  DP +  V++ +   +   K+LGS
Sbjct: 300 LEPFAQAGVNLSKIESRPSRRAAWDYNFYLDLDGHQADPKVGAVIDDVRSRSAFFKILGS 359

Query: 360 YPKA 363
           YP+A
Sbjct: 360 YPRA 363


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 372
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 368
Length adjustment: 30
Effective length of query: 335
Effective length of database: 338
Effective search space:   113230
Effective search space used:   113230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_043766422.1 U743_RS06095 (prephenate dehydratase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.17713.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17713.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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