Alignments for a candidate for leuC in Algiphilus aromaticivorans DG1253

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_043766450.1 U743_RS06175 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000733765.1:WP_043766450.1
          Length = 467

 Score =  614 bits (1583), Expect = e-180
 Identities = 300/464 (64%), Positives = 366/464 (78%), Gaps = 1/464 (0%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           KTLY+K++DAH V   ++ + LLYIDRHLVHEVTSPQAF+GLR  GR   +     A  D
Sbjct: 4   KTLYQKIWDAHTVVGYDDGSALLYIDRHLVHEVTSPQAFEGLRLAGRKPWRVDANLAVPD 63

Query: 63  HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           HNV T+ +       ++R Q++ L  NC EFG+  +DL    QGIVHV+GPEQG TLPGM
Sbjct: 64  HNVPTRDRIKGIADPISRAQLEALDTNCAEFGITKFDLMDVRQGIVHVIGPEQGATLPGM 123

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182
           T+VCGDSHT+THGAFGALAFGIGTSEVEH LATQTL    AKTM++ V+G    G+TAKD
Sbjct: 124 TVVCGDSHTSTHGAFGALAFGIGTSEVEHALATQTLVMWPAKTMRVTVRGHVGKGVTAKD 183

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           IVLA+IG+ G+AGGTGHV+E+ GEAIRDLSMEGRMT+CNM+IE GA+AGL+APD+ T +Y
Sbjct: 184 IVLAVIGRIGTAGGTGHVIEYAGEAIRDLSMEGRMTVCNMSIEAGARAGLIAPDDRTIDY 243

Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302
           V+GR  APKG D++ AVA W+ L +D+ A FD  V ++A+EI+PQV+WGT+P  V+ V  
Sbjct: 244 VEGRPFAPKGTDWEKAVAAWRELGSDDDAVFDREVVIEADEIAPQVSWGTSPEMVVPVTG 303

Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362
            +PDPA   D  +R   E+ALAYM LKPG+ + ++A DK+FIGSCTN+RIEDLRAAAE+ 
Sbjct: 304 VVPDPAEQTDAGKREGMERALAYMDLKPGMAMRDIAPDKIFIGSCTNARIEDLRAAAEVV 363

Query: 363 KGRKVAPGVQ-ALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPG 421
           +GRK A  ++ A+VVPGSG V+ QAEAEGLDKIF++AGFEWR PGCSMCLAMN DRL PG
Sbjct: 364 RGRKRADNIKLAMVVPGSGLVREQAEAEGLDKIFLDAGFEWREPGCSMCLAMNADRLEPG 423

Query: 422 ERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           ERCASTSNRNFEGRQG GGRTHLVSPAMAAAAAV GHF D+R +
Sbjct: 424 ERCASTSNRNFEGRQGAGGRTHLVSPAMAAAAAVAGHFVDVREL 467


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 807
Number of extensions: 28
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 467
Length adjustment: 33
Effective length of query: 433
Effective length of database: 434
Effective search space:   187922
Effective search space used:   187922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_043766450.1 U743_RS06175 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.29008.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29008.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.