Alignments for a candidate for asd in Algiphilus aromaticivorans DG1253

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_043766453.1 U743_RS06190 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000733765.1:WP_043766453.1
          Length = 340

 Score =  401 bits (1030), Expect = e-116
 Identities = 201/339 (59%), Positives = 253/339 (74%), Gaps = 3/339 (0%)

Query: 1   MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60
           MS+Q++VA+ GATGAVG+ ML++L++R+FPV +++ LAS RS G+   F    + V+++ 
Sbjct: 1   MSKQYDVAVVGATGAVGQEMLKILRQRKFPVGKVYALASARSVGEELDFGADELYVEDLA 60

Query: 61  EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120
            FD+S+V I LFS G  +SA++AP AA AG VVIDNTS FRYD D+PLVVPEVN  AIA 
Sbjct: 61  GFDFSKVQIGLFSPGASVSAEYAPKAAAAGCVVIDNTSQFRYDPDVPLVVPEVNAHAIAG 120

Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180
           +  R IIANPNCSTIQMLVALKPI DAVGIERINV TYQSVSG GK  I+ELA  +A+ L
Sbjct: 121 YTKRGIIANPNCSTIQMLVALKPILDAVGIERINVATYQSVSGTGKEAIEELADTSARAL 180

Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240
           +G   E+  + +QIAFNC+P ID F  NGYTKEEMKMVWET KIF D SI VNPT VRVP
Sbjct: 181 SGQDFESKVYPKQIAFNCLPHIDTFQPNGYTKEEMKMVWETHKIFEDDSIQVNPTAVRVP 240

Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFR---GADFPTQVRDAGGKDHVLVGR 297
           VFYGH+EA+H+ETR  I A++  ++L    GI++        +PT V +    D V VGR
Sbjct: 241 VFYGHSEALHIETREKISADRARELLAAAPGIKVMDEHVDGGYPTAVTEGAHHDEVFVGR 300

Query: 298 VRNDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
           +R DISH  G++LWVV+DN+RKGAA N+VQIAE L+ +Y
Sbjct: 301 IREDISHPRGLDLWVVSDNIRKGAALNSVQIAECLIAEY 339


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 348
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 340
Length adjustment: 28
Effective length of query: 309
Effective length of database: 312
Effective search space:    96408
Effective search space used:    96408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_043766453.1 U743_RS06190 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.22176.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22176.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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