Alignments for a candidate for carA in Algiphilus aromaticivorans DG1253

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_043767317.1 U743_RS08615 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000733765.1:WP_043767317.1
          Length = 383

 Score =  460 bits (1184), Expect = e-134
 Identities = 224/378 (59%), Positives = 271/378 (71%), Gaps = 2/378 (0%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           A L L DGT FHG AIGA G+  GEVVFNT+M+GYQEILTDPSY RQIVTLTYPHIGNVG
Sbjct: 7   ATLALADGTLFHGYAIGAEGTTTGEVVFNTAMSGYQEILTDPSYQRQIVTLTYPHIGNVG 66

Query: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
            N  D ES +V   GLV+R++P   S++R      +YL+   +VAI  IDTR+LT  LR 
Sbjct: 67  ANSEDTESDRVQLAGLVLREVPRPPSSYRAERAFDAYLRDEGVVAIGGIDTRRLTNHLRN 126

Query: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEA 184
            GAQ GCI AG+      ALE AR F GL G DLA+  +TAE Y W  GSW         
Sbjct: 127 AGAQAGCIAAGEGLSVETALEAARGFSGLKGADLARGASTAERYEWKHGSWRFADNASPV 186

Query: 185 KKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGD 244
            +  +   HVV  DFG KRNILR+LVDR CR+T+VPA TSAE++L + PDG+ LSNGPGD
Sbjct: 187 IEGGKR--HVVVCDFGVKRNILRLLVDRDCRVTVVPATTSAEEILALAPDGVLLSNGPGD 244

Query: 245 PAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNV 304
           P PCDYAI   +  +E  +P FGICLGHQ+L LA+GA+T+KMKFGHHG NHPV+D+    
Sbjct: 245 PEPCDYAIATARALIEAKMPTFGICLGHQILGLAAGARTLKMKFGHHGANHPVQDLRDGR 304

Query: 305 VMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAA 364
           V+IT+QNHGFA+DEA+LPA + VTH+SLFDGT QG+   D PAFSFQGHPEASPGP D A
Sbjct: 305 VLITSQNHGFAIDEASLPAGVTVTHRSLFDGTNQGLALDDAPAFSFQGHPEASPGPRDVA 364

Query: 365 PLFDHFIELIEQYRKTAK 382
            LFD F+ +I+++   A+
Sbjct: 365 GLFDDFVTMIDRHAGAAR 382


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 524
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 383
Length adjustment: 30
Effective length of query: 352
Effective length of database: 353
Effective search space:   124256
Effective search space used:   124256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_043767317.1 U743_RS08615 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.30296.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30296.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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