Alignments for a candidate for dapA in Algiphilus aromaticivorans DG1253

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_043768161.1 U743_RS10725 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>NCBI__GCF_000733765.1:WP_043768161.1
          Length = 293

 Score =  353 bits (905), Expect = e-102
 Identities = 184/293 (62%), Positives = 221/293 (75%), Gaps = 1/293 (0%)

Query: 1   MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60
           MI GS+VALVTP DA G +D+++L +LV +H++ GT AIVAVGTTGESATLD +EHI VI
Sbjct: 1   MITGSIVALVTPMDADGAVDYEALDRLVAWHIEAGTAAIVAVGTTGESATLDNDEHIAVI 60

Query: 61  RRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 120
           RRVV     RIPVIAGTGAN+T EA+ALT AA   GADA LLVTPYYNKP QEG+Y+HFR
Sbjct: 61  RRVVAAADRRIPVIAGTGANATSEAIALTRAAADCGADAALLVTPYYNKPPQEGLYRHFR 120

Query: 121 HIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIE-RVGK 179
            +AEAV IPQILYNVPGRT CD+LP TV+RL++VPNIIG+KEA  D  R KE++   +  
Sbjct: 121 AVAEAVDIPQILYNVPGRTGCDLLPVTVKRLAEVPNIIGLKEALADEARIKELVGCGLPG 180

Query: 180 DFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPL 239
           DF +YSGDD TA   ML G  G++SV ANVAP  M+ +CAAA  GD AAA A +  L  L
Sbjct: 181 DFALYSGDDGTACGAMLAGFHGDVSVVANVAPAMMARMCAAATAGDRAAAEAADAELAGL 240

Query: 240 HKALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVLA 292
           H+ LF+++NPIPVKWALH MGLI  GIRLPL  L+   H+ LR  +R  G L+
Sbjct: 241 HRDLFLQANPIPVKWALHAMGLIGAGIRLPLVPLAEEHHDTLRATLRAAGALS 293


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 285
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 293
Length adjustment: 26
Effective length of query: 266
Effective length of database: 267
Effective search space:    71022
Effective search space used:    71022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_043768161.1 U743_RS10725 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.25293.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25293.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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