Alignments for a candidate for glnA in Algiphilus aromaticivorans DG1253

Align glutamine synthetase (EC 6.3.1.2) (characterized)
to candidate WP_043768526.1 U743_RS11695 glutamate--ammonia ligase

Query= BRENDA::P0A1P6
         (469 letters)



>NCBI__GCF_000733765.1:WP_043768526.1
          Length = 469

 Score =  670 bits (1728), Expect = 0.0
 Identities = 312/469 (66%), Positives = 382/469 (81%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           MSA+  + ++ +   KFVD RF DTKGKEQ+VT+PAH ++ + F +GKMFDGSSI GWKG
Sbjct: 1   MSAQDAMKLIKDKGAKFVDFRFVDTKGKEQNVTVPAHTIDDDLFTDGKMFDGSSIQGWKG 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATG 120
           IN+SDM+LMP++ +  IDPFF + T ++RCD++EP T+QGY RDPRS+AKRAE Y+++ G
Sbjct: 61  INDSDMILMPESDSIFIDPFFEEPTAVLRCDVIEPSTMQGYTRDPRSLAKRAEAYMQSCG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 180
           IADT  FGPE EFF+FD +R+   +  +   ID  E  W+S   YE GN GHRPGVKGGY
Sbjct: 121 IADTAYFGPENEFFVFDSVRWSNQMGHTFYEIDSEEATWSSGKSYEMGNMGHRPGVKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPVPPVDS QD+RS MCL +E++G+  E HHHEVATAGQ E+ T+FNT+ KKADE   YK
Sbjct: 181 FPVPPVDSLQDLRSAMCLTLEEIGIETEVHHHEVATAGQCEIGTKFNTLVKKADETLAYK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIG 300
           YVVHNVAH+FGKTATFMPKP+ GDNG+GMH H SLAK+G NLF+GD+Y GLSE AL+YIG
Sbjct: 241 YVVHNVAHQFGKTATFMPKPLVGDNGNGMHVHQSLAKDGKNLFAGDEYGGLSETALFYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVR 360
           G++KHA+AINA  NP TNSYKRLVPG+EAPVMLAYSARNRSASIRIP VA+PK RRIEVR
Sbjct: 301 GILKHAQAINAFTNPGTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVANPKGRRIEVR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPD  ANPYL FAA++MAGLDGI+NKIHPG+AMDK+LY+LPPEE  +IP+VA  L+ AL+
Sbjct: 361 FPDSLANPYLAFAAMMMAGLDGIQNKIHPGDAMDKDLYNLPPEEDIKIPRVAHGLDVALD 420

Query: 421 ALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
           ALD DR+FLKAG VF+D+ IDAY+ L+ EE  R RM  HP EF++YYS+
Sbjct: 421 ALDKDRDFLKAGDVFSDDLIDAYMELKMEEVTRFRMATHPCEFDMYYSM 469


Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 753
Number of extensions: 28
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_043768526.1 U743_RS11695 (glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.22416.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22416.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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