Alignments for a candidate for lysA in Algiphilus aromaticivorans DG1253

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_043770185.1 U743_RS17220 diaminopimelate decarboxylase

Query= BRENDA::Q9KVL7
         (417 letters)



>NCBI__GCF_000733765.1:WP_043770185.1
          Length = 424

 Score =  470 bits (1210), Expect = e-137
 Identities = 242/410 (59%), Positives = 293/410 (71%), Gaps = 3/410 (0%)

Query: 10  GQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVL 69
           G L+AE V    LA ++GTPLYVYSRA LE  + AFD++  + PH +C+AVKANSNL VL
Sbjct: 12  GVLYAEDVSCEQLAQRFGTPLYVYSRAALESAYRAFDEAFAELPHRVCFAVKANSNLAVL 71

Query: 70  NTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEP 129
            TLAR GSGFDIVS GEL RVLAAGGDP+ +VFSGVGK   EM  AL   I CFN+ES  
Sbjct: 72  QTLARAGSGFDIVSGGELARVLAAGGDPAGIVFSGVGKAREEMAAALDAGIGCFNIESVA 131

Query: 130 ELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSL 189
           EL  L++ A + G+ AP++LR+NPDVD KTHPYI+TGL  +KFGI    A  +Y  A   
Sbjct: 132 ELDLLDRTARDKGMSAPVALRVNPDVDPKTHPYIATGLAQSKFGIAIADAPALYAEAMQR 191

Query: 190 PNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDEL 249
           P L V G+ CHIGSQL  L PF DA DRLL L   L+A+G+ + HLD+GGGLGV Y DEL
Sbjct: 192 PGLQVVGLACHIGSQLLDLDPFEDALDRLLELAGQLQAQGVPLAHLDIGGGLGVRYGDEL 251

Query: 250 PPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAM 309
           PP P+ YA  L  +L     L +  EPGRAIAANAG+L+T+V +LK +  +NFAI+DAAM
Sbjct: 252 PPSPAAYAARLKPKLAA-TGLAVHLEPGRAIAANAGLLLTRVHYLKASSARNFAIVDAAM 310

Query: 310 NDLIRPALYQAWQDIIPLRPRQGEAQ--TYDLVGPVCETSDFLGKDRDLVLQEGDLLAVR 367
           NDL+RPALY AWQ+I+ + P  GE +   YD+VGPVCE+ DFLGK R L L+  DLLAVR
Sbjct: 311 NDLLRPALYDAWQEIVAVHPHNGEDEQLLYDIVGPVCESGDFLGKQRPLALRADDLLAVR 370

Query: 368 SSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLPE 417
            +GAYGF M+SNYNTRPR AEV+VDG   +L R RE L  L   E +LPE
Sbjct: 371 GAGAYGFVMASNYNTRPRPAEVLVDGGNEHLARARETLEDLMRGEQLLPE 420


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 508
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 424
Length adjustment: 32
Effective length of query: 385
Effective length of database: 392
Effective search space:   150920
Effective search space used:   150920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_043770185.1 U743_RS17220 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.18754.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18754.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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