Alignments for a candidate for fadA in Cereibacter sphaeroides ATCC 17029

Align Beta-ketothiolase BktB; Acetyl-CoA acetyltransferase; Acetyl-CoA acyltransferase; EC 2.3.1.16; EC 2.3.1.9 (characterized)
to candidate WP_043827862.1 RSPH17029_RS00115 acetyl-CoA C-acyltransferase family protein

Query= SwissProt::Q0KBP1
         (394 letters)



>NCBI__GCF_000015985.1:WP_043827862.1
          Length = 389

 Score =  444 bits (1142), Expect = e-129
 Identities = 232/391 (59%), Positives = 279/391 (71%), Gaps = 4/391 (1%)

Query: 4   EVVVVSGVRTAIGTFGGSLKDVAPAELGALVVREALARAQVSGDDVGHVVFGNVIQTEPR 63
           +++V+S VRTAIG FGG+L  V P +L   V R AL RA V    VGHVVFG+VI TEPR
Sbjct: 3   DILVLSAVRTAIGGFGGALAAVPPGDLATTVTRAALERAGVEPGRVGHVVFGHVINTEPR 62

Query: 64  DMYLGRVAAVNGGVTINAPALTVNRLCGSGLQAIVSAAQTILLGDTDVAIGGGAESMSRA 123
           DMYL RVAA+  G+    PA+ VNRLCGSG+QAIVSA Q ++LGD +VA+ GGAESMSRA
Sbjct: 63  DMYLSRVAAMQAGIPSEVPAMNVNRLCGSGVQAIVSAMQALMLGDAEVALAGGAESMSRA 122

Query: 124 PYLAPAARWGARMGDAGLVDMMLGALHDPFHRIHMGVTAENVAKEYDISRAQQDEAALES 183
           PY    ARWG +MGD   +DMM GAL+ PF   HMG+TAE VA+ + ISR  QD  ALES
Sbjct: 123 PYALTTARWGQKMGDTRALDMMTGALNCPFGTGHMGITAEIVAERHGISREDQDAFALES 182

Query: 184 HRRASAAIKAGYFKDQIVPVVSKGRKGDVTFDTDEHVRHDATIDDMTKLRPVFVKENGTV 243
             R + A + G F  QIVPV    RKG V+F  DEH +   T++ +  LRP F K  GTV
Sbjct: 183 QTRTARAQEEGRFDGQIVPVEIASRKGPVSFSRDEHPK-ATTLEALAGLRPAFQK-GGTV 240

Query: 244 TAGNASGLNDAAAAVVMMERAEAERRGLKPLARLVSYGHAGVDPKAMGIGPVPATKIALE 303
           TAGNASG+ND A A+++    E    G +PL RL+ Y HAGVDP+ MG+GP+PA +    
Sbjct: 241 TAGNASGINDGAGALILAR--EGAVPGARPLGRLIGYAHAGVDPEVMGLGPIPAVQALCA 298

Query: 304 RAGLQVSDLDVIEANEAFAAQACAVTKALGLDPAKVNPNGSGISLGHPIGATGALITVKA 363
           R GL V+D DVIE+NEAFAAQA AV +AL  DPA+VNPNG  I+LGHP+GATGA+ITVKA
Sbjct: 299 RTGLSVADFDVIESNEAFAAQALAVARALDFDPARVNPNGGAIALGHPVGATGAIITVKA 358

Query: 364 LHELNRVQGRYALVTMCIGGGQGIAAIFERI 394
           LHEL+R  GR ALVTMCIGGGQGIA   ER+
Sbjct: 359 LHELHRTGGRRALVTMCIGGGQGIALALERV 389


Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 544
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 389
Length adjustment: 31
Effective length of query: 363
Effective length of database: 358
Effective search space:   129954
Effective search space used:   129954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_043827862.1 RSPH17029_RS00115 (acetyl-CoA C-acyltransferase family protein)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.27933.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.27933.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.