Align 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (characterized)
to candidate WP_043828496.1 RSPH17029_RS17945 5-dehydro-2-deoxygluconokinase
Query= reanno::Caulo:CCNA_01356
(642 letters)
>NCBI__GCF_000015985.1:WP_043828496.1
Length = 640
Score = 639 bits (1649), Expect = 0.0
Identities = 346/641 (53%), Positives = 412/641 (64%), Gaps = 9/641 (1%)
Query: 6 KTLDLIAVGRSSVDLYGQQVGGRLEDMGSFAKYLGGSPTNTAAGGARLGLKTGLLTRVGA 65
KTLD+I +GRSSVDLYG QVGGRLEDMGSFAKY+GGSPTN A G ARLGLKT ++TRVG
Sbjct: 3 KTLDVITIGRSSVDLYGTQVGGRLEDMGSFAKYIGGSPTNIACGTARLGLKTAVITRVGD 62
Query: 66 DHMGRFIREQLEREGVDVAGVLSDPDRLTALVILGIRDRVNFPLIFYRENCADMALEPSD 125
+HMGRFIREQL REGVDV GV +DPDRLTALV+LGIRD +FPLIFYRENCADMAL D
Sbjct: 63 EHMGRFIREQLVREGVDVRGVATDPDRLTALVLLGIRDETSFPLIFYRENCADMALSEED 122
Query: 126 VDEAWFAQAGAVLINGTHLSQPNVYETSLKAARAVKAAGGRVAFDIDYRPVLWGLTGKDA 185
+DE + A+A AVL GTHLS P LKA + G + A DIDYRP LWG+ G
Sbjct: 123 IDEGFIAEARAVLATGTHLSHPRTEAAVLKALTLARRHGAKTALDIDYRPNLWGVAGHGD 182
Query: 186 GENRFVENQQVTAKLQEVVALCDLIVGTEEEIHILGGSTDTIAALRAIRRASDALLVCKR 245
GE+RFVE+ +VT KLQ + L DLIVGTEEE HI GG+TDT+AALRA+R S+A LVCKR
Sbjct: 183 GESRFVESGKVTTKLQGTLHLFDLIVGTEEEFHIAGGTTDTLAALRAVRAVSEATLVCKR 242
Query: 246 GPEGCVAFPGAIPDALDEGVSARGFKVEVFNVLGAGDAFMAGFLRGWLRHESVETCCEWG 305
G +G VAF G IPD+LD G + GF +EVFNVLGAGD F +G L+GWL T ++
Sbjct: 243 GAKGAVAFEGPIPDSLDAGQTGPGFPIEVFNVLGAGDGFFSGLLKGWLDGADWPTALKYA 302
Query: 306 NACGAIVVSRHGCTPAMPTWIELQAFLSERERPFRLREDAELEHIHWATTRE----RVYD 361
NACGA VSRHGCTPA P+ E++ FL LR D LE IHWAT R+ +
Sbjct: 303 NACGAFAVSRHGCTPAYPSLAEMEFFLERGVIRPDLRNDEALEQIHWATNRQGRMGGDWS 362
Query: 362 ELTVLAIDHRSQFEDLIAETGGDAERIPDFKRLALRAVQMVAGRDETRFGMLLDGRFGFE 421
+ V A DHR Q E + G R FK L L+A VA + +G+L D R G
Sbjct: 363 TMRVFAFDHRIQLEQM---AGYTPARGGAFKELCLKAALKVAD-GRSGYGILCDNRIGRA 418
Query: 422 ALAEAADHDYWIARPIELPKSRPLEFECS-ADVATELLEWPLNQVVKCLAFYHPDDESDL 480
AL A+ WI RP E P SRPLE E L EW VVK L F HPDD++
Sbjct: 419 ALHAASGTGLWIGRPCEWPGSRPLEIEPELGPDCGGLQEWARENVVKVLCFCHPDDDAAT 478
Query: 481 RERQERQLLRLADACRKTRHELLLELILPRGMSSDSRTVARAIRRLYALGIRPDWWKLEP 540
R QE + RL A R+ E LLE+I + D T A IR+ YA GI PDWWKLEP
Sbjct: 479 RRDQEATVKRLFTAARRNGLEFLLEVIPSKVAPVDDETTATLIRQFYAAGIYPDWWKLEP 538
Query: 541 LTDPDAWREIEIAIAENDPLCRGVVLLGLSAPEAELVASFEVVAPFPIVKGFAVGRTIFY 600
+ AW AI +D RG+V+LGL A EA+L ASFEV A F +V+GFA+GRTIF
Sbjct: 539 MVTRTAWANAIAAIEAHDRHTRGIVVLGLDASEADLAASFEVAAEFDLVRGFAIGRTIFG 598
Query: 601 DVARAWLSNQIDDDAAVTALAAKFKVLVDAWRRLRGSVEKA 641
+VA+ WL+ IDD A +A ++ L W R + +A
Sbjct: 599 EVAQGWLAGTIDDAEATDRMAERYARLCAIWDSARETARRA 639
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1097
Number of extensions: 39
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 640
Length adjustment: 38
Effective length of query: 604
Effective length of database: 602
Effective search space: 363608
Effective search space used: 363608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Align candidate WP_043828496.1 RSPH17029_RS17945 (5-dehydro-2-deoxygluconokinase)
to HMM TIGR04382 (iolC: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92))
../bin/blast/fastacmd -i /tmp/list.17083.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.17083.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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