Alignments for a candidate for argB in Azorhizobium caulinodans ORS 571

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_043878847.1 AZC_RS03585 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000010525.1:WP_043878847.1
          Length = 301

 Score =  286 bits (731), Expect = 5e-82
 Identities = 137/290 (47%), Positives = 210/290 (72%)

Query: 7   DAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVH 66
           +A   A+VL++ALP+++R+    +V+KYGG+AM ++EL   FA+D+VL++  G+NPVVVH
Sbjct: 11  EAQLQAEVLTKALPHMQRYDDAIVVVKYGGHAMGNDELARHFAQDIVLLEQSGVNPVVVH 70

Query: 67  GGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGL 126
           GGGPQIG +L++L I+S F  G+R+TD AT+++VEMVL G +NK IV  IN  GG AIGL
Sbjct: 71  GGGPQIGAMLEKLGIKSEFAAGLRITDKATIEIVEMVLAGSINKQIVGFINEAGGKAIGL 130

Query: 127 TGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIG 186
            GKD  ++RA+K T T   P+    E++D+G VGE   V+  +L+ ++  + IPV+AP+ 
Sbjct: 131 CGKDGNMVRARKATRTIVDPQSHIEEVVDLGFVGEPDTVDTMVLDQILGRELIPVLAPVA 190

Query: 187 VGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADG 246
              +G +YN+NAD  AG +A AL A++L+LLT++ G++DK  Q++  L+ ++   LIADG
Sbjct: 191 SAVDGGTYNVNADTFAGAIAGALGAKRLLLLTDVPGVLDKNKQLIPRLTIDECRALIADG 250

Query: 247 TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 296
           T+ GGM+PK+   + A++ GV    I+DG++P++VLLE+ TD G+GTLI+
Sbjct: 251 TVSGGMIPKVETCIYALEKGVEGVVIMDGKLPHSVLLELLTDHGIGTLIT 300


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 284
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 301
Length adjustment: 27
Effective length of query: 274
Effective length of database: 274
Effective search space:    75076
Effective search space used:    75076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_043878847.1 AZC_RS03585 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.8832.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8832.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.