Alignments for a candidate for argH in Azorhizobium caulinodans ORS 571

Align Argininosuccinate lyase 1; ASAL 1; EC 4.3.2.1; Arginosuccinase 1 (uncharacterized)
to candidate WP_043880551.1 AZC_RS19880 argininosuccinate lyase

Query= curated2:Q5WHY3
         (498 letters)



>NCBI__GCF_000010525.1:WP_043880551.1
          Length = 503

 Score =  352 bits (903), Expect = e-101
 Identities = 179/479 (37%), Positives = 293/479 (61%), Gaps = 2/479 (0%)

Query: 4   RLKESPSQEMIDLLFKPSIRSDLKHHYSYLLKINSVHLFMLKSEGIISDEAASKIHSVLT 63
           RL++  +QE+ D ++ P + +D    + YL  IN  H+ ML ++ +I  +AA  +   L 
Sbjct: 14  RLQDETAQEICDFIYLPRL-ADFARGFPYLTAINQAHILMLDAQALIPSDAAKTLAEALL 72

Query: 64  HLQVTGKEALSINPALEDLYFNVEAYIIEQTGPEIGGQMHTGRSRNDILATVTRMRIREE 123
            ++  G  A++++P  ED YFN EA++I + G +IGG+ HT RSRNDILAT+ RMR R+ 
Sbjct: 73  QMEENGPSAIALDPQREDAYFNYEAHLIGKVGLDIGGRAHTARSRNDILATMDRMRCRDL 132

Query: 124 MLEIYELVCTLRRTLIDLATEHTSTLMTGYTHLQPAEPITFAHYLSALLHGFERDFTRLY 183
           ++ + + +  LR+T  + A  +   +M GYTHLQPA+P+T+  YL+ +    ERD  RL 
Sbjct: 133 VIALLDALAELRQTAAEQAARYVDVVMPGYTHLQPAQPMTYGFYLAGVAEALERDAERLA 192

Query: 184 NCYAHINKSPLGSCALASTTFSINRKFTMELLGFADLLENSLDGIASRDYALEALSALSI 243
             Y  +++ PLG+ A A T + I+R  T  LLGF  +++++LD +ASRD+  E L +LSI
Sbjct: 193 GAYGRVDRCPLGAGAFAGTPYGIDRSETARLLGFPAVVDSTLDAVASRDFIFEVLGSLSI 252

Query: 244 FSNSLSRFAQDLYTWCSYEFGYLEVGHSVAVISSIMPQKKNPVTLEHIKAKAGHIQGALV 303
            + + SR AQD + W + EF ++E   SVA  SSIMPQKKNP+ LE +K KAGHI G   
Sbjct: 253 LAATWSRIAQDYFLWSTDEFRFIEFPDSVAGTSSIMPQKKNPIVLEFLKGKAGHIIGHYA 312

Query: 304 SSLSVLKNTLYSHSRDTSMESMKYTWEAINETKAAIRLMIKTLQTLTVHKDNMAATTRQN 363
            ++S+L+ T ++HS D + ES+ + W A ++   +++L+   ++T +  ++ M    R+N
Sbjct: 313 GAVSILRATNFTHSGDANRESISFFWGAADDCLTSLKLLRLIIRTASPRREVMLKRAREN 372

Query: 364 FSTVTELANALVRHYHFSFRTAHHIVAEIVNETLNQGLGSDKIEASTVERAIKQVTAKTV 423
           FS+ T+LA+A+V     SFR AHHIV  +V + L+  L +D+I    V+RA +    + +
Sbjct: 373 FSSATDLADAIVMKSGLSFRQAHHIVGAVVRDALDHDLTADRISLDMVQRACRDQMGREI 432

Query: 424 SVTKEFVEQALDPERNISLRTVRGGSAPVEVARQLQQLEQTLASDHQKISDLKQALQSA 482
           ++++E V  +LDP  +++ R   GG A   V   L +++  L +D Q     ++ + +A
Sbjct: 433 ALSEEDVHASLDPRISVASRR-DGGPAEEGVRMVLGKVQAKLDADRQDNRRRREVIDAA 490


Lambda     K      H
   0.318    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 457
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 503
Length adjustment: 34
Effective length of query: 464
Effective length of database: 469
Effective search space:   217616
Effective search space used:   217616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_043880551.1 AZC_RS19880 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.10252.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10252.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.