GapMind for catabolism of small carbon sources

 

Protein WP_044136943.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_044136943.1

Length: 282 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 25 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism badI med BadI (characterized) 49% 99% 246.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
phenylacetate catabolism badI med BadI (characterized) 49% 99% 246.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-phenylalanine catabolism badI med BadI (characterized) 49% 99% 246.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
4-hydroxybenzoate catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-arginine catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-citrulline catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-lysine catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
phenylacetate catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-phenylalanine catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-proline catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-valine catabolism ech lo Crotonyl-CoA hydratase; EC 4.2.1.150 (characterized) 37% 98% 137.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-isoleucine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 35% 99% 132.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
propionate catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 35% 99% 132.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-threonine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 35% 99% 132.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-valine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 35% 99% 132.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-isoleucine catabolism ech lo Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (characterized) 34% 98% 117.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
4-hydroxybenzoate catabolism paaF lo trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 98% 114.4 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
phenylacetate catabolism paaF lo trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 98% 114.4 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-phenylalanine catabolism paaF lo trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 98% 114.4 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-leucine catabolism liuC lo methylglutaconyl-CoA hydratase (EC 4.2.1.18) (characterized) 33% 93% 108.6 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
phenylacetate catabolism paaG lo 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) (characterized) 33% 99% 107.5 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-phenylalanine catabolism paaG lo 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase (EC 5.3.3.18) (characterized) 33% 99% 107.5 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
4-hydroxybenzoate catabolism badK lo BadK (characterized) 32% 98% 100.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
phenylacetate catabolism badK lo BadK (characterized) 32% 98% 100.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4
L-phenylalanine catabolism badK lo BadK (characterized) 32% 98% 100.9 1,4-dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36) 83% 483.4

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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