GapMind for catabolism of small carbon sources

 

Protein WP_044137750.1 in Trichodesmium erythraeum IMS101

Annotation: NCBI__GCF_000014265.1:WP_044137750.1

Length: 399 amino acids

Source: GCF_000014265.1 in NCBI

Candidate for 3 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism boxA lo Benzoyl-CoA oxygenase component A; Benzoyl-CoA 2,3-dioxygenase subunit A; Benzoyl-CoA dioxygenase reductase component; EC 1.14.13.208 (characterized) 39% 67% 198 ferredoxin-NADP+ reductase (EC 1.18.1.2) 61% 501.5
phenylacetate catabolism boxA lo Benzoyl-CoA oxygenase component A; Benzoyl-CoA 2,3-dioxygenase subunit A; Benzoyl-CoA dioxygenase reductase component; EC 1.14.13.208 (characterized) 39% 67% 198 ferredoxin-NADP+ reductase (EC 1.18.1.2) 61% 501.5
L-phenylalanine catabolism boxA lo Benzoyl-CoA oxygenase component A; Benzoyl-CoA 2,3-dioxygenase subunit A; Benzoyl-CoA dioxygenase reductase component; EC 1.14.13.208 (characterized) 39% 67% 198 ferredoxin-NADP+ reductase (EC 1.18.1.2) 61% 501.5

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000014265.1

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