Alignments for a candidate for asp-kinase in Thiomicrospira microaerophila ASL8-2

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_044409599.1 NA59_RS06170 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000934765.1:WP_044409599.1
          Length = 405

 Score =  533 bits (1373), Expect = e-156
 Identities = 275/404 (68%), Positives = 335/404 (82%), Gaps = 1/404 (0%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MALIVQK+GGTSVG++ERI+ VA+KV KF D G  +VVV+SAMSGETNRL ++AK +  +
Sbjct: 1   MALIVQKYGGTSVGSLERIQNVAKKVSKFVDEGHQVVVVLSAMSGETNRLTEMAKTMQAR 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
           P  RE+D++++TGEQVTI+LL+MAL ++G  A+SYTG Q+ I TD  HTKARI  I+A +
Sbjct: 61  PSKREMDMLLTTGEQVTISLLSMALQEKGYGAISYTGWQIPIQTDEVHTKARIDSINADK 120

Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           I   +  G+VVVVAGFQGV   G+I+TLGRGGSDTT VALAAALKADECQIYTDVDGVYT
Sbjct: 121 IHDQLNQGKVVVVAGFQGVTANGDISTLGRGGSDTTAVALAAALKADECQIYTDVDGVYT 180

Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEGPGTLI 240
           TDPRVV +A+RLD ITF+EMLEMASLG+KVLQIR+VEFA KY VPLRVL S  EG GTLI
Sbjct: 181 TDPRVVPEARRLDTITFDEMLEMASLGAKVLQIRSVEFASKYKVPLRVLSSLTEGGGTLI 240

Query: 241 TLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAH 300
           T  E+ +ME+P+ISGIAFNRDE+KL IRGVPD PG+AF +LGPI+ AN+E+DMI+QN   
Sbjct: 241 T-SEDNNMEKPLISGIAFNRDESKLQIRGVPDKPGIAFALLGPIADANIEIDMIIQNQGQ 299

Query: 301 DNTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVASRM 360
           D TTDFTFTV R D  +A ++L+GIA  +GARE I D +IAKVS+VGVGMRSH G+ASRM
Sbjct: 300 DGTTDFTFTVPRGDRAHAHEILEGIAQVLGAREVIFDDSIAKVSLVGVGMRSHVGIASRM 359

Query: 361 FEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
           F+ LA +NINIQMI+T+EIK+SVVI+E  LE AV++LH  FELD
Sbjct: 360 FKVLADQNINIQMIATTEIKISVVIKESELESAVKSLHQQFELD 403


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 503
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 405
Length adjustment: 31
Effective length of query: 381
Effective length of database: 374
Effective search space:   142494
Effective search space used:   142494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_044409599.1 NA59_RS06170 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.17380.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17380.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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