Alignments for a candidate for argG in Thiomicrospira microaerophila ASL8-2

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_044411616.1 NA59_RS09635 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000934765.1:WP_044411616.1
          Length = 405

 Score =  506 bits (1303), Expect = e-148
 Identities = 251/394 (63%), Positives = 305/394 (77%), Gaps = 4/394 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTSII KWL++ Y+ EV+ FTADIGQGEEVE AR KA   G  +    DL
Sbjct: 6   KVVLAYSGGLDTSIIAKWLQDEYQCEVVTFTADIGQGEEVEPARAKAQAMGIKEIFIEDL 65

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEF RDFVFPM RA A+YEG YLLGTSIARPLIAK LV IA++  A+AI+HGATGKGND
Sbjct: 66  REEFARDFVFPMFRANAIYEGEYLLGTSIARPLIAKRLVEIAKDVNADAISHGATGKGND 125

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK--PYSMDANLL 179
           QVRFEL AYAL PD++VIAPWREW    R++++ YAE H I +   + K  PYSMDANLL
Sbjct: 126 QVRFELGAYALMPDVRVIAPWREWDLNSREKLMTYAEEHNIAIENKKGKKSPYSMDANLL 185

Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239
           HISYEGGVLEDPW+EP + M+R +  PE AP+ P Y+E+ + +GD VA+NG+ LSPA ++
Sbjct: 186 HISYEGGVLEDPWSEPEESMWRWSVSPENAPNEPTYIELTYEKGDIVALNGQALSPATIM 245

Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299
             LN+IGG +G+GR D+VENRFVGMKSRG YETP GTI+  A RA+ES+TLDRE  H +D
Sbjct: 246 AELNKIGGANGIGRDDLVENRFVGMKSRGCYETPAGTIMIKAHRAIESITLDREAAHLKD 305

Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPK-SLY 358
            L P+YA+LVY GFW++PERE LQA  D     V GV RLKLYKGNV VVGRK+   SL+
Sbjct: 306 ELMPRYAKLVYNGFWFSPEREMLQAAIDKSQTVVNGVVRLKLYKGNVIVVGRKSESDSLF 365

Query: 359 RQDLVSF-DEAGGYDQKDAEGFIKIQALRLRVRA 391
            + + +F D+ G Y+QKDAEGFIK+ ALRLR+ A
Sbjct: 366 DESIATFEDDKGAYNQKDAEGFIKLNALRLRIAA 399


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 499
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 405
Length adjustment: 31
Effective length of query: 369
Effective length of database: 374
Effective search space:   138006
Effective search space used:   138006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_044411616.1 NA59_RS09635 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.20977.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20977.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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