Alignments for a candidate for proA in Thiomicrospira microaerophila ASL8-2

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_044412455.1 NA59_RS11020 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_000934765.1:WP_044412455.1
          Length = 417

 Score =  350 bits (899), Expect = e-101
 Identities = 179/415 (43%), Positives = 269/415 (64%), Gaps = 5/415 (1%)

Query: 2   LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEA 61
           ++ +G AA+ A+  L   +S +KN  L  +A ELE QS  +   NA+D+A  RA GL  A
Sbjct: 7   MQALGQAARLAARVLVVATSEQKNAALLAMAAELEDQSAFLKAENAKDLAAGRAKGLDAA 66

Query: 62  MLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEA 121
           ML+RLA+T   +  +A+ +RQ+  L DP+G++ D     SG+++ + RVPLGV+G+IYE+
Sbjct: 67  MLERLAMTDKTIAQMAEGLRQIAGLVDPIGEITDLRYRPSGIQVGKMRVPLGVVGIIYES 126

Query: 122 RPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDR 181
           RPNVT+D A+LCLK+GNA ILRGG E   +N A  A IQ  L   GLP  AVQ ++  DR
Sbjct: 127 RPNVTIDAAALCLKSGNAAILRGGSEAAYSNRALAACIQSGLAQAGLPETAVQVVETTDR 186

Query: 182 ALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKV 241
             V E++ M K++D++IPRGG  L +   E + +PVI    G+CH+Y+D+  +  +A++V
Sbjct: 187 EAVGELIAMPKFVDVIIPRGGKSLIERISEGARVPVIKHLDGICHVYIDDQADKEKAVRV 246

Query: 242 IVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKV 301
            +NAKT R   CN +ETLL+ ++ A   LP L+    + GV L       + ++A PA  
Sbjct: 247 ALNAKTHRYGVCNAMETLLIAQSRAAEILPELAALYLQKGVELRGCEQTCSLIEAKPA-- 304

Query: 302 VAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDS 361
                +++  E+L+  L++++V D+  AI HI  + + H+++I+T ++  A+ F+  VDS
Sbjct: 305 ---SEQDWQTEYLAPILSIRVVVDMTAAIEHIAAYSSGHTESIITENITKAREFLARVDS 361

Query: 362 SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416
           S+V VNASTRF DG ++GLGAE+ +ST K HARGP+GLE LT+ K+I +GD  IR
Sbjct: 362 SSVMVNASTRFADGFEYGLGAEIGISTDKFHARGPVGLEGLTSQKYIVLGDGHIR 416


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 417
Length adjustment: 31
Effective length of query: 386
Effective length of database: 386
Effective search space:   148996
Effective search space used:   148996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_044412455.1 NA59_RS11020 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.12775.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12775.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.