Alignments for a candidate for ilvE in Oleispira antarctica

Align Probable branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 (uncharacterized)
to candidate WP_046007640.1 OLEAN_RS00755 branched-chain amino acid aminotransferase

Query= curated2:O86505
         (362 letters)



>NCBI__GCF_000967895.1:WP_046007640.1
          Length = 331

 Score =  203 bits (516), Expect = 6e-57
 Identities = 132/338 (39%), Positives = 174/338 (51%), Gaps = 15/338 (4%)

Query: 29  FGRHFTDHMVTIKWTEGRGWHDGQLVPYAPLSLDPATMVLHYAQEIFEGLKAYRRPDGSV 88
           FG  F   M    + +   W    +VP   L L P   VLHY+   FEGLKA++  DGSV
Sbjct: 4   FGTVFMPKMALASF-DNNSWTASSIVPSDKLELHPGAHVLHYSSTCFEGLKAFKHEDGSV 62

Query: 89  ATFRPEKNGARFQASSRRLGMPELPVDTFIEACDALVAQDEKWVPAHGGEESLYLRPFMI 148
             FR + N  R   SS  L +P +  D   +     V      VP   G  S+Y+RP  I
Sbjct: 63  NVFRMDANIERMSQSSELLSLPAINKDQLAQMIKDAVGLYADEVPTPPG--SMYIRPTHI 120

Query: 149 ATE--VGLGVRPANEYLFIVIASPAGAYFPGGVKPVSIWVSEDRVRAVPGGMGDAKTGGN 206
            TE  +G    P    L  V+ SP G YF GG KP+ + + ED +R  P  MG  K+GGN
Sbjct: 121 GTEPAIGKAAAPTASSLLYVLLSPVGDYFTGGAKPLRLLLEEDGMRCAPH-MGMIKSGGN 179

Query: 207 YAASLLAQAEAAAKGC--DQVCYLDAIERKWVEELGGMNLYFVYGNKIVTPSLTGSILEG 264
           YA S L     A K C  DQ+ +    +   V+E G  N   + GN+I+T +L  + L G
Sbjct: 180 YA-SALGPISRARKECNADQILFCPNGD---VQETGAANFILIDGNEIITKALDSTFLHG 235

Query: 265 VTRDSLLTVARDLGYEAEEGRVSVDQW-QRDSENGTLTEVFACGTAAVITPVGTVKRAGA 323
           VTRDS+LT+ARD G    E   +V +  +R  + GT  E    GTAAV+TPVGT+   G 
Sbjct: 236 VTRDSILTIARDAGMTVTERDFTVAELLERAKKPGT--EAALSGTAAVLTPVGTLIHNGQ 293

Query: 324 QWQQSGGETGEVTQRLRDALLDIQRGTVADPHGWMHTL 361
           ++    GE GE T +LR AL DIQ G   D +GW+ T+
Sbjct: 294 EFTVGSGEPGETTNKLRQALNDIQWGKAEDKYGWLETI 331


Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 379
Number of extensions: 18
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 331
Length adjustment: 29
Effective length of query: 333
Effective length of database: 302
Effective search space:   100566
Effective search space used:   100566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_046007640.1 OLEAN_RS00755 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.20617.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20617.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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