Alignments for a candidate for trpD_2 in Oleispira antarctica

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_046007842.1 OLEAN_RS02030 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000967895.1:WP_046007842.1
          Length = 347

 Score =  300 bits (768), Expect = 4e-86
 Identities = 163/338 (48%), Positives = 216/338 (63%), Gaps = 5/338 (1%)

Query: 6   QQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMR 65
           QQ L + IE + +  +EM+ +MRQ+M GE + A +   L GLR+K ETI EI GA  VMR
Sbjct: 4   QQGLAKVIERQNLTTEEMISVMRQVMSGEATPAQIGGFLVGLRMKGETIDEITGATAVMR 63

Query: 66  EFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 125
           E S  V+V D  + VD  GTGGDGS+ FN+ST + FV AA G KVAKHGNRSVSS +GSA
Sbjct: 64  ELSSGVKVDDP-NAVDTCGTGGDGSNLFNVSTASAFVVAAAGGKVAKHGNRSVSSTTGSA 122

Query: 126 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL 185
           D LE  G  + L  EQVA  + + G+GFM+AP HH AMK     R+E+  RTIFN+LGPL
Sbjct: 123 DVLEFAGVSLTLTMEQVARCVNEIGVGFMFAPAHHSAMKYAIGPRKELAQRTIFNMLGPL 182

Query: 186 TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDG 245
           TNPAG  N ++GVF+  L    A VLQ LG+E  L+V   DG+DE+SL A T V EL+DG
Sbjct: 183 TNPAGVKNQVIGVFNAALCRPLAEVLQRLGSEHVLIVHSDDGLDEISLAAETSVAELKDG 242

Query: 246 QVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVL----DNVPGPALDIVALNAGAA 301
           Q+ EY++ PE+ GI+  +   L V+ A +S  ++   L          A DI+ALN+GAA
Sbjct: 243 QITEYKLKPEEVGISSQSLIGLTVSSAEQSYLLIKDALGKRETEAGNKAADIIALNSGAA 302

Query: 302 LYVAGVADSIADGIVRARQVLADGSARACLDAYVAFTQ 339
           +Y A +A S+  G+  A+  +  G A   L+  V+FT+
Sbjct: 303 IYAANIASSLEQGVEMAQDAIFTGLALGKLNELVSFTR 340


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 299
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 347
Length adjustment: 29
Effective length of query: 316
Effective length of database: 318
Effective search space:   100488
Effective search space used:   100488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_046007842.1 OLEAN_RS02030 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.11572.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11572.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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