Alignments for a candidate for gatA in Oleispira antarctica

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_046007871.1 OLEAN_RS02200 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000967895.1:WP_046007871.1
          Length = 484

 Score =  480 bits (1236), Expect = e-140
 Identities = 238/476 (50%), Positives = 326/476 (68%), Gaps = 1/476 (0%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           + ++ Q +   E    ++      RI+ +D +  +F+ + +E+A   AK  DE +     
Sbjct: 6   LAQISQDLQAGEYSSVEVTQHFLDRIKNLDGQYNSFITVTDEQALTQAKAADE-LRAAGN 64

Query: 68  HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127
                G+P+  KD   T+G+RT+C SK+L+ F   YDATV        AV++GK NMDEF
Sbjct: 65  ANEWTGVPMAHKDIFCTEGVRTSCGSKMLDKFIAPYDATVADNFNKVGAVSLGKTNMDEF 124

Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187
           AMGSS+E+S Y   KNPWN + VPGGSSGGSAAAVAA   P    +DTGGSIRQPASFCG
Sbjct: 125 AMGSSSESSFYGAVKNPWNEEHVPGGSSGGSAAAVAARLAPGITATDTGGSIRQPASFCG 184

Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247
           V G+KPTYGRVSR+G+V++ASSLDQ GPI R  ED A +L  ++G DK DSTS +  VPD
Sbjct: 185 VTGIKPTYGRVSRFGMVSYASSLDQGGPIARNAEDAAMMLNVMAGFDKKDSTSIDRAVPD 244

Query: 248 FLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALA 307
           + + L   +KG+ I +PKEY    +     +++  A+K  E +GAT +E+SLP++   + 
Sbjct: 245 YRADLNKSVKGMTIGLPKEYFSSDLDPAMAQTIQDAIKEYEKMGATLKEISLPNTHLCVP 304

Query: 308 TYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALS 367
            YY+++ SE SANL+R DG+R+G+R ++  N+ DLYK++R+EGFG+EV+RRIMLG++ALS
Sbjct: 305 AYYVIAPSECSANLSRMDGVRFGHRCEDPKNIEDLYKRSRSEGFGDEVQRRIMLGSYALS 364

Query: 368 SGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDIL 427
           +G+YDAYYKKAQ+VR LIK DF   F   DVI+ P  P+PAFK GE +KDP++MY  DI 
Sbjct: 365 AGFYDAYYKKAQQVRRLIKNDFVAAFNDVDVIMSPVAPSPAFKFGEKSKDPVSMYLEDIF 424

Query: 428 TIPVNLAGVPGISVPCGLADGLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483
           T+  NLAG+PG+SVP G+ + LP+GLQ+IG +FDES +   AH F+ ATD H   P
Sbjct: 425 TLATNLAGLPGMSVPAGMINDLPVGLQLIGNYFDESRLLNCAHQFQNATDWHTQTP 480


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 576
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 484
Length adjustment: 34
Effective length of query: 451
Effective length of database: 450
Effective search space:   202950
Effective search space used:   202950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_046007871.1 OLEAN_RS02200 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.7757.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7757.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.