Alignments for a candidate for serC in Oleispira antarctica

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_046008642.1 OLEAN_RS07030 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_000967895.1:WP_046008642.1
          Length = 360

 Score =  377 bits (967), Expect = e-109
 Identities = 191/362 (52%), Positives = 244/362 (67%), Gaps = 2/362 (0%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           M +++NF +GPA LP  VL QAQ +L +W   G SVME+SHR  EF+ +A++AE+D RDL
Sbjct: 1   MTRLYNFCAGPAALPVPVLAQAQADLLNWQNKGLSVMEMSHRSPEFVGIAKKAEQDLRDL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           + +P NY VLF  GG   QF  +P+N+L  K TADY++ G W+  AI EAK++CT NV  
Sbjct: 61  MVIPDNYSVLFMQGGASSQFTMIPMNLLRGKKTADYINTGQWSKKAIAEAKRFCTVNVA- 119

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL 180
           A    +   +     E  L+  AAY+HY PNETI G+  D  P+    V + AD+SS IL
Sbjct: 120 ASTEGNHFTSAPSQEELNLNPEAAYVHYTPNETIGGVQFDYIPETNG-VPLVADYSSAIL 178

Query: 181 SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT 240
           S  IDVSR+ +IYAGAQKNIGPAGL IVI+R+DLLG      P++ DY ++ DN SM+NT
Sbjct: 179 SEEIDVSRFAMIYAGAQKNIGPAGLCIVIIRDDLLGDVVEGTPTMFDYKVMADNDSMYNT 238

Query: 241 PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV 300
           PP++ WYL+GLVF WLK  GGV  + ++NQ+KA+ LY  ID + FY N VA  NRS MNV
Sbjct: 239 PPSYGWYLAGLVFAWLKEQGGVKAIAEVNQRKAKKLYSFIDTNPFYANPVAINNRSSMNV 298

Query: 301 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360
           PF L +S LDK FL  S  AGL  L GHR VGGMRASIYNA+  + V AL  FM EF + 
Sbjct: 299 PFTLVNSDLDKAFLAASEKAGLLNLAGHRSVGGMRASIYNAVEEKAVDALIAFMDEFAKE 358

Query: 361 HG 362
           +G
Sbjct: 359 NG 360


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 394
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 360
Length adjustment: 29
Effective length of query: 333
Effective length of database: 331
Effective search space:   110223
Effective search space used:   110223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_046008642.1 OLEAN_RS07030 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.27957.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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