Alignments for a candidate for trpB in Oleispira antarctica

Align Tryptophan synthase beta chain 1; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_046009017.1 OLEAN_RS09335 tryptophan synthase subunit beta

Query= uniprot:P50383
         (425 letters)



>NCBI__GCF_000967895.1:WP_046009017.1
          Length = 413

 Score =  143 bits (360), Expect = 1e-38
 Identities = 117/364 (32%), Positives = 171/364 (46%), Gaps = 56/364 (15%)

Query: 72  IGRPTPLFRAKRLEEYLKTPARIYFKYEGATPTGSHKINTAIPQAYFAKEEGIEHVVTET 131
           +GRP+PL+ A++L ++    A+IY K E    TG+HKIN  I QA  AK  G + ++ ET
Sbjct: 68  VGRPSPLYFAEQLTKHCGG-AKIYLKREDLNHTGAHKINNTIGQALLAKYSGKKKIIAET 126

Query: 132 GAGQWGTAVALAASMYNMKSTIFMVKVSYEQKPMRRSIMQLYGANVYASPTNLTEYGRKI 191
           GAGQ G A A  A+   M+  +FM     E++ +    MQL GA V +      E G K 
Sbjct: 127 GAGQHGVATATVAARLGMECKVFMGSTDIERQKLNVYRMQLLGAEVIS-----VESGTKT 181

Query: 192 LETNPQHPGSLGIAMSEAIEYALKN--EFRYLVGSVLD------VVLLHQSVIGQETITQ 243
           L+           AM++A+ + + N  +  Y++G+         +V   QS+IG+ETI Q
Sbjct: 182 LKD----------AMNDAMRHWVTNVDDTFYILGTAAGPHPYPMLVRDFQSIIGRETIRQ 231

Query: 244 LDL-LGEDADILIGCVGGGSNFGGFTYPFIGNKKGKRYIAVSSAEI-------------- 288
            +  +G   D LI C+GGGSN  G  YP++ N    R I V +  +              
Sbjct: 232 CEAQVGRQPDALIACIGGGSNAIGMFYPYL-NMHDVRMIGVEAGGLGLLGNDHAAPLCKG 290

Query: 289 -PKFSKGEYKYDFPDSAGLLPLVKMITLGKDYVPPPIYAGGLRYHGVAPTLSLLTKEGIV 347
            P    G   Y   D  G +     I+ G D            Y GV P  S L   G  
Sbjct: 291 RPGVLHGNRTYLMEDDNGQIMGTHSISAGLD------------YPGVGPEHSWLKDIGRA 338

Query: 348 EWREYNEREIFEAAKIFIENQGIVPAPESAHAIRAVVDEAIEARKNNERKVIVFNLSGHG 407
           E+    + E  +A +     +GI+PA ES+HAI   +  A + R +   +V+V NLSG G
Sbjct: 339 EYVAATDEEALDAFRALTRIEGIMPALESSHAIAHAMKMAKDMRPD---QVLVVNLSGRG 395

Query: 408 LLDL 411
             D+
Sbjct: 396 DKDI 399


Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 361
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 413
Length adjustment: 32
Effective length of query: 393
Effective length of database: 381
Effective search space:   149733
Effective search space used:   149733
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_046009017.1 OLEAN_RS09335 (tryptophan synthase subunit beta)
to HMM TIGR00263 (trpB: tryptophan synthase, beta subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.27626.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27626.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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