Align Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_046009440.1 OLEAN_RS12135 ornithine carbamoyltransferase
Query= SwissProt::P08308 (336 letters) >NCBI__GCF_000967895.1:WP_046009440.1 Length = 333 Score = 460 bits (1184), Expect = e-134 Identities = 225/335 (67%), Positives = 278/335 (82%), Gaps = 2/335 (0%) Query: 1 MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRT 60 M+FN+ NRN L L+ + R++ +LLDLSRDLKRAKY+G EQQ LK KNI LIFEK+STRT Sbjct: 1 MSFNLRNRNFLKLLDFNQRDVNFLLDLSRDLKRAKYSGMEQQSLKGKNICLIFEKSSTRT 60 Query: 61 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120 CAFEVA++DQGA +TY+ P+ SQIG KESMKDTARVLGRM+DAIEYRGF Q++VEELA+ Sbjct: 61 LCAFEVASFDQGAQITYLGPSGSQIGKKESMKDTARVLGRMFDAIEYRGFGQKVVEELAQ 120 Query: 121 FAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKL 180 +AGVPV+NGLTDE+HPTQMLAD+LTMREHS KPL DISYAY+GDA +NMG+SL++ G + Sbjct: 121 YAGVPVYNGLTDEFHPTQMLADLLTMREHSKKPLSDISYAYVGDAHSNMGHSLMIAGCLM 180 Query: 181 GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEP 240 GMDVRIAAPK+LWP +EF+ ++ + G KLT+TEDPKEAVKG DF+HTDVWVSMGEP Sbjct: 181 GMDVRIAAPKSLWPSEEFLKPARELEKLYGGKLTITEDPKEAVKGCDFIHTDVWVSMGEP 240 Query: 241 VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGI 300 W ERIK L PY+V+ E+M+ATG KFMHCLPAFHN +T VG+ I +++ LA + Sbjct: 241 DAVWEERIKLLTPYRVDSELMQATGISTTKFMHCLPAFHNRDTIVGEDIFQKF-GLAE-M 298 Query: 301 EVTEDVFESPYNIAFEQAENRMHTIKAILVSTLAD 335 EV+++VFES I FEQAENR+HTIKA+LV+TL + Sbjct: 299 EVSDEVFESVAGIQFEQAENRLHTIKAMLVATLGN 333 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 377 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 336 Length of database: 333 Length adjustment: 28 Effective length of query: 308 Effective length of database: 305 Effective search space: 93940 Effective search space used: 93940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate WP_046009440.1 OLEAN_RS12135 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.28764.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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