Alignments for a candidate for dapD in Oleispira antarctica

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate WP_046009890.1 OLEAN_RS14935 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= SwissProt::G3XD76
         (344 letters)



>NCBI__GCF_000967895.1:WP_046009890.1
          Length = 341

 Score =  456 bits (1173), Expect = e-133
 Identities = 225/338 (66%), Positives = 269/338 (79%)

Query: 7   SLAFGVGTQNRQEAWLEVFYALPLLKPSSEIVAAVAPILGYAAGNQALTFTSQQAYQLAD 66
           + A G+GT+N +  WLEV+Y  PL +PS++I+AA    +GY AGNQA+     +   LA 
Sbjct: 4   AFAIGLGTKNAKGEWLEVYYQAPLFQPSADIIAAAKEAIGYEAGNQAIEVDGGELEALAA 63

Query: 67  ALKGIDAAQSALLSRLAESQKPLVATLLAEDAAPSSTAEAYLKLHLLSHRLVKPHAVNLS 126
           AL+ I  AQ+AL     ES+KP+V T+L  D    ST E YLKLHLLSHRLVKPH +NL+
Sbjct: 64  ALESIAPAQAALAKACTESKKPVVITILESDVQSESTPEVYLKLHLLSHRLVKPHGINLA 123

Query: 127 GIFPLLPNVAWTNIGAVDLAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPAGVRIAD 186
           G+F LLPNVAWTN+GA+DLAEL   QL+ARL G LL V  VDKFP+MTDY+VP+GVRIA 
Sbjct: 124 GMFGLLPNVAWTNLGAIDLAELPAAQLQARLNGDLLSVNCVDKFPRMTDYIVPSGVRIAH 183

Query: 187 TARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTL 246
           TARVRLGA+IGEGTT+MHEGFVNFNAGT G  M+EGR+SAGV VG GSDLGGGCSTMGTL
Sbjct: 184 TARVRLGAHIGEGTTIMHEGFVNFNAGTLGVSMVEGRISAGVVVGNGSDLGGGCSTMGTL 243

Query: 247 SGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKVALLDEQNALVKVVKAR 306
           SGGGNI+ISVGE CL+GANAG GIPLGDR  +E+GLYIT+GTK+ +LD+   +V+ VK R
Sbjct: 244 SGGGNIIISVGENCLLGANAGTGIPLGDRCTIESGLYITSGTKIQVLDDAKNVVETVKGR 303

Query: 307 DLAGQPDLLFRRNSQNGAVECKTNKTAIELNEALHAHN 344
           DLAG+ DLLFRRNS +GAVEC TNKTAI+LNE LHA+N
Sbjct: 304 DLAGKADLLFRRNSISGAVECVTNKTAIQLNEELHANN 341


Lambda     K      H
   0.317    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 390
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 341
Length adjustment: 29
Effective length of query: 315
Effective length of database: 312
Effective search space:    98280
Effective search space used:    98280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_046009890.1 OLEAN_RS14935 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR03536 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.3814.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3814.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.